Structure of PDB 6zqd Chain UD Binding Site BS01

Receptor Information
>6zqd Chain UD (length=663) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ERMIVHRCRFVDFTPATITSLAFSHKSNINKLTPSDLRLAIGRSNGNIEI
WNPRNNWFQEMVIEGGKDRSIEGLCWSNVNGESLRLFSIGGSTVVTEWDL
ATGLPLRNYDCNSGVIWSISINDSQDKLSVGCDNGTVVLIDISGGPGVLE
HDTILMRQEARVLTLAWKKDDFVIGGCSDGRIRIWSAQKNDENMGRLLHT
MKVDKAKKESTLVWSVIYLPRTDQIASGDSTGSIKFWDFQFATLNQSFKA
HDADVLCLTTDTDNNYVFSAGVDRKIFQFSQNTNKSQKNNRWVNSSNRLL
HGNDIRAICAYQSKGADFLVSGGVEKTLVINSLTSFSNGNYRKMPTVEPY
SKNVLVNKEQRLVVSWSESTVKIWTMGNYKLVCKLTLKDDQNISTCSLSP
DGQVLVVGRPSTTKVFHLQPVGNKLKVTKLDNDLLLRTSTKLVKFIDNSK
IVICSCEDDVFIVDLPQEVELLEVTSTKSSIKVPYINRINHLEVDQNIAV
ISRGCGVVDILDLKARISKPLARLNNFITAVHINTSRKSVVVITADNKIY
EFNMNLNSESVLTQWSKNNTDNLPKEWKTLKENCVGIFSDIENSSRLWFW
GATWISRIDFDVDFPINHFFFTDKYKPLLFVDLISSNELAIIERNPLTFH
SKQKAFIQPKLVF
Ligand information
>6zqd Chain D2 (length=81) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ugcgaaagcaguugaagacaagugcuugucguucguuaaaauggccucgu
cggauuugguggaaggaaacucaaagagugc
<<<....>>>...<<<<<<<<<..>>>>>>.>>>................
...............................
Receptor-Ligand Complex Structure
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PDB6zqd 90 S pre-ribosome transformation into the primordial 40 S subunit.
Resolution3.8 Å
Binding residue
(original residue number in PDB)		K303 N325 L327 Q771 P772 K773 L774 F776
Binding residue
(residue number reindexed from 1)		K275 N297 L299 Q658 P659 K660 L661 F663
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003674 molecular_function
GO:0005515 protein binding
Biological Process
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0006364 rRNA processing
GO:0030490 maturation of SSU-rRNA
GO:0042254 ribosome biogenesis
GO:0045943 positive regulation of transcription by RNA polymerase I
Cellular Component
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005730 nucleolus
GO:0030686 90S preribosome
GO:0032040 small-subunit processome
GO:0034455 t-UTP complex
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6zqd, PDBe:6zqd, PDBj:6zqd
PDBsum6zqd
PubMed32943521
UniProtQ06679|UTP4_YEAST U3 small nucleolar RNA-associated protein 4 (Gene Name=UTP4)

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