Structure of PDB 8fmw Chain U Binding Site BS01

Receptor Information
>8fmw Chain U (length=69) Species: 224326 (Borreliella burgdorferi B31) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MVTVTVDKNENLEKALKRFKRMIEKEAIIREWKRREYYEKPSTIRVKKEK
AFKRKQAKKVRKLKQKTNR
Ligand information
>8fmw Chain A (length=1529) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
aaauaacgaagaguuugauccuggcuuagaacuaacgcuggcagugcguc
uuaagcaugcaagucaaacgggauguagcaauacauucaguggcgaacgg
gugaguaacgcguggaugaucuaccuaugagauggggauaacuauuagaa
auaguagcuaauaccgaauaaggucaguuaauuuguuaauugaugaaagg
aagccuuuaaagcuucgcuuguagaugagucugcgucuuauuagcuaguu
gguaggguaaaugccuaccaaggcaaugauaaguaaccggccugagaggg
ugaacggucacacuggaacugagauacgguccagacuccuacgggaggca
gcagcuaagaaucuuccgcaaugggcgaaagccugacggagcgacacugc
gugaaugaagaaggucgaaagauuguaaaauucuuuuauaaaugaggaau
aagcuuuguaggaaaugacaaagugaugacguuaauuuaugaauaagccc
cggcuaauuacgugccagcagccgcgguaauacguaaggggcgagcguug
uucgggauuauugggcguaaagggugaguaggcggauauauaagucuaug
cauaaaauaccacagcucaacuguggaccuauguuggaaacuauaugucu
agagucugauagaggaaguuagaauuucugguguaaggguggaaucuguu
gauaucagaaagaauaccggaggcgaaggcgaacuucugggucaagacug
acgcugagucacgaaagcguagggagcaaacaggauuagauacccuggua
gucuacgcuguaaacgaugcacacuugguguuaacuaaaaguuaguaccg
aagcuaacguguuaagugugccgccuggggaguaugcucgcaagagugaa
acucaaaggaauugacgggggcccgcacaagcgguggagcaugugguuua
auucgaugauacgcgaggaaccuuaccagggcuugacauauauaggauau
aguuagagauaauuauuccccguuuggggucuauauacaggugcugcaug
guugucgucagcucgugcugugagguguuggguuaagucccgcaacgagc
gcaacccuuguuaucuguuaccagcauguaaugguggggacucagauaag
acugccggugauaagucggaggaaggugaggaugacgucaaaucaucaug
gcccuuauguccugggcuacacacgugcuacaauggccuguacaaagcga
agcgaaacagugaugugaagcaaaacgcauaaagcaggucucaguccgga
uugaagucugaaacucgacuucaugaaguuggaaucgcuaguaaucguau
aucagaaugauacggugaauacguucucgggccuuguacacaccgcccgu
cacaccacccgaguugaggauacccgaagcuauuauucuaacccguaagg
gaggaagguauuuaagguauguuuagugaggggggugaagucguaacaag
guagccguacuggaaagugcggcuggauc
..........<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<..
...<<<.<<<..<<<..<<.<<<<<<<....>>>>>>>.>>>>>......
<<.......<<<<<<<<..<<...<<<<<<<.<.<<.....<<<<<<...
.>>>>>>......>>.>.....<<<<<<<<<....>>>>>>>>>....<<
<............>>>.>>>>>>>..>>>>>>>>>><<<....<<<..<<
<<<<<<.......>>>>>>>>>>>......>>>..<<<<<<<<....>>>
>...>>>>.>>.<<<<<.<.........>>>>>>.<<<<....>>>>...
>>>>>>.........<<<....<<<<....>>>>..>>>..>>.>>>>>>
..<<<<......<<<<....>>>>.....>>>>...<<<<<<<.......
..<<<<<<<........>>>>>>>..........>>>>>>>.....<<<<
<(((...<<<<<.....<<.)))>>.......>>>>>>>>>>..>>>>>>
>>>..........<<<((.....<<<<...<<<.<<<<<<<.<<<<<..<
<<<<.....<<<<<<.....>>>>>>...>>>>>.>>>..>>>>>>>>>.
..<<<<<<<<...<<<<<<<....<<<<<<<<<..<<<......>>>...
..>>>>>>>>.>..........<<....>>.>>>>>>>..>>>>.>>>>.
..>>>...>>>>...<<<<<<<...<<...<<<<.<.....>.>>>>...
>>>>>>>>>.........<<<<<<.<<<<<<<<<<.....>>>>>>>>>>
..<<..))>>.....>>>>>>.>>>.<<<......<<<<....>>>>...
.>>>..)))).]<<<<<.<<<<<<<.<<.<<<<<<..<<<<<<<<<<...
...<<........>>..........<<<<<<<......<<<<<.......
<<<<<....>>>>>....<<<.....>>>...>>>>>.<<<.<<<..<<<
<<<.......<<<<<<<<<....>>>..<<<<......>>>>..>>>>>>
.....<<<<.<<<<<<<...<<..<<<......>>>>>....>>>>>>>.
....<<<<<.....>>>>>........>>>>.........>>>...>>>>
>>>>>...>>>>>>>...>>.>>>>>>>>.....<<<<<<<.....<<<.
.<<...<<<....>>>...>>....>>>.....>>>>>>>......<...
.<<<<<<<........>>>>>>>....>.....>>>>>>....<<<<<<<
.........>>>>>>>......>>...>>>>>>>>>>.>>....<..<<.
<.<<<<.<<<..<<<<<<.<<<<<...<<.<<<..<<<<..<<.....>>
.>.>>>.>>>.>>..>>>>>.>>>>>>..>>>.>>>>..>.>>...>...
..<<<<<<<<<....>>>>>>>>>.....
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8fmw The structure of a hibernating ribosome in a Lyme disease pathogen.
Resolution2.86 Å
Binding residue
(original residue number in PDB)		E31 R35 S42 R45 K50 F52 R54
Binding residue
(residue number reindexed from 1)		E31 R35 S42 R45 K50 F52 R54
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8fmw, PDBe:8fmw, PDBj:8fmw
PDBsum8fmw
PubMed37907464
UniProtO51271|RS21_BORBU Small ribosomal subunit protein bS21 (Gene Name=rpsU)

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