Structure of PDB 7ooc Chain T Binding Site BS01

Receptor Information

>7ooc Chain T (length=53) Species: 272634 (Mycoplasmoides pneumoniae M129)

EVKNDDLELALKKFKRVSLEIRRLAQRHEYHLRKGMRLREKRKIAQKKRR
KFR

Ligand information

>7ooc Chain 5 (length=1493)

ucugagaguuugauccuggcucaggauuaacgcuggcggcaugccuaaua
caugcaagucgaucgaaaguaguaauacuuuagaggcgaacgggugagua
acacguauccaaucuaccuuauaaugggggauaacuaguugaaagacuag
cuaauaccgcauaagaacuuugguucgaaucaaaguugaaaggaccugca
aggguucguuauuugaugagggugcgccauaucagcuaguugguggggua
acggccuaccaaggcaaugacguguagcuaugcugagaaguagaauagcc
acaaugggacugagacacggcccauacuccuacgggaggcagcaguaggg
aauuuuucacaaugagcgaaagcuugauggagcaaugccgcgugaacgau
gaaggucuuuaagauuguaaaguucuuuuauuugggaagaaugacuuuag
cagguaauggcuagaguuugacuguaccauuuugaauaagugacgacuaa
cuaugugccagcagucgcgguaauacauaggucgcaagcguuauccggau
uuauugggcguaaagcaagcgcaggcggauugaaaagucugguguuaaag
gcagcugcuuaacaguuguaugcauuggaaacuauuaaucuagagugugg
uagggaguuuuggaauuucauguggagcggugaaaugcguagauauauga
aggaacaccaguggcgaaggcgaaaacuuaggccauuacugacgcuuagg
cuugaaaguguggggagcaaauaggauuagauacccuaguaguccacacc
guaaacgauagauacuagcugucggggcgauccccucgguagugaaguua
acacauuaaguaucucgccuggguaguacauucgcaagaaugaaacucaa
acggaauugacggggacccgcacaagugguggagcauguugcuuaauucg
acgguacacgaaaaaccuuaccuagacuugacauccuuggcaaaguuaug
gaaacauaaugccgagugacagguggugcaugguugucgucagcucgugu
cgugagauguuggguuaagucccgcaacgagcgcaacccuuaucguuagu
uacauugucuagcgagacugcuaaugcaaauuggaggaaggaagggauga
cgucaaaucaucaugccccuuaugucuagggcugcaaacgugcuacaaug
gccaauacaaacagucgccagcuuguaaaagugagcaaaucuguaaaguu
ggucucaguucggauugagggcugcaauucguccucaugaagucggaauc
acuaguaaucgcgaaucagcuaugucgcggugaauacguucucgggucuu
guacacaccgcccgucaaacuaugaaagcugguaauauuuaaaaacgugu
ugcuaaccauuaggaagcgcaugucaaggauagcaccggugauuggaguu
aagucguaacaagguaccccuacgagaacguggggguggauca

.....<<<<..[.(((..>>>>.<<<<.<<<<<..<<<<<<<<.....<<
<.<<<..<<<..<<.<<<<<<....>>>>>>.>>>>>......<<.....
...<<<<<<<..<<...<..<<<<<<.<<.....<<<<<<....>>>>>>
......>>.>.....<<<<<<<<<<..>>>>>>>>>>....<<<<<<...
.>>>>>>>>>>>..>..>>>>>>>>>.<<<....<<<..<<<<<<<<...
....>>>>>>>>>>>......>>>..<<<<<<<<....>>>...>>>>>.
>>.<<<<<.<.........>>>>>>.<<<<<..>>>>>...>>>>>>...
...<..<<<....<<<<....>>>>..>>>.>>>.>>>>>>..<<<<...
...<<<<<...>>>>>.....>>>>...<<..<<<.......<<<<<<<<
<........>>>>>>>.>>.......>>>...>>.....<<<<<(((...
<<<<<.....<<.)))>>.......>>>>>>>>>>..>>>>>>>>>....
......<<<((.....<<<<...<<<.<<<<<<..<<<<<<<<<<.....
<<<<<<<.....>>>>>>>..>>>>>>>>..>>.>>>>>>...<<<<<<<
<...<<<<<<<....<<<<<<<<<..<<<......>>>.....>>>>>>>
>>...........<<....>>.>>>>>>>..>>>>>.>>>...>>>...>
>>>....<<<<<<...<<...<<<<.<.....>.>>>>...>>>>>>>>.
.........<<<<<<..<<<<<<<<<<......>>>>>>>>>>...<<..
))>>.....>>>>>>.>>>.<<<.....<<<<<....>>>>>...>>>..
..))).]<<<<<.<<<<<<<.<<.<<<<<<..<<<<<<<<<<......<<
........>>..........<<<<<<<......<<<<<<<....<<<<<<
....>>>>>>.>>>>>.>>.<<<.<<<..<<<<<<.......<<<<<<<<
<....>>>..<<<<......>>>>..>>>>>>.....<<<<.<<<<<<<.
........>>>>>>>.....<<<<<....>>>>>........>>>>....
.....>>>...>>>>>>>>>...>>>>>>>...>>.>>>>>>>>.....<
<<<<<<.....<<<..<<..<<<<....>>>>..>>....>>>....>>>
>>>>......<....<<<<<<<........>>>>>>>....>.....>>>
>>>....<<<<<<<..........>>>>>>>......>>...>>>>>>>>
>>.>>....<..<<.<.<<<<.<<<..<<<<<<..<<<<<....<<<<<.
<<<<..<<....>>.>>>>>>>>>...>>>>>..>>>>>>..>>>.>>>>
..>.>>...>.....<<<<<<<<<....>>>>>>>>>......

Receptor-Ligand Complex Structure

Structure summary

• PDB: 7ooc Visualizing translation dynamics at atomic detail inside a bacterial cell.
• Resolution: 3.7 Å
• Binding residue (original residue number in PDB): R31 R37 R43 K45 A49 K51
• Binding residue (residue number reindexed from 1): R27 R33 R39 K41 A45 K47

Gene Ontology

Molecular Function

• GO:0003735 structural constituent of ribosome

Biological Process

• GO:0006412 translation

Cellular Component

• GO:0005840 ribosome
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:7ooc, PDBe:7ooc, PDBj:7ooc
• PDBsum: 7ooc
• PubMed: 36171285
• UniProt: P57079|RS21_MYCPN Small ribosomal subunit protein bS21 (Gene Name=rpsU)