Structure of PDB 5h1s Chain T Binding Site BS01

Receptor Information
>5h1s Chain T (length=147) Species: 3562 (Spinacia oleracea) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VLPDDFQAPEPGTPEYNDIINQFLPKKGPPPPREEIFAVVVIGSRQYIVI
PGRWIYTQRLKGATVNDKIVLNKVLLVGTKASTYIGTPIVTNAAVHAVVE
EQLLDDKVIVFKYKKKKNYRRNIGHRQPITRIKITGITGYEDYPAST
Ligand information
>5h1s Chain A (length=2799) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uucaaacgaggaaaggcuuacgguggauaccuaggcacccagagacgagg
aagggcguauuaaucgacgaaaugcuucggggaguugaaaauaagcagag
auccggagauucccgaauaggucaaccuuucgaacuucugcugaauccau
gggcaggcaagagacaaccuggcgaacugaaacaucuuaguagccagagg
aaaagaaagcaaaagcgauucccguaguagcggcgagcgaaaugggagca
gccuaaaccgugaaaacgggguugugggagagcaauacaagcgucgugcu
gcuaggcgaaucaguggagugcggaacccuagauggugaaaguccaguag
ccgaaagcaucacuagcuuaugcucugacccgaguagcauggggcacgug
gaaucccgugugaaucagcaaggaccaccuugcaaggcuaaauacuccug
ggugaccgauagcgaaguaguaccgugagggaagggugaaaagaaccccc
aucggggagugaaauagaacaugaaaccguaagcucucaagcagugggag
ggggaacccugaccgcgugccuguugaagaaugagccggcgacucauagg
caguggcuugguuaagggaacccaccggagccguagcgaaagcgagucuu
cauagggcaauugucacugcuuauggacccgaaccugggugaucuaucca
ugaccaggaugaagcuugggugaaacuaaguggagguccgaaccgacuga
uguugaagaaucagcggaugaguugugguuaggggugaaaugccacucga
acccagagcuagcugguucuccccgaaaugcguugaggcgcagcaguuga
cuggacaucuagggguaaagcacuguuucggugcgggccgcgagagcggu
accaaaucgaggcaaacucugaauacuagauaugaccuccaaauaacagg
ggucaaggucggccagugagacgaugggggauaagcuucaucgucgagag
ggaaacagcccggaucaccagcuaaggccccuaaaugaccgcucagugau
aaaggagguaggggugcagagacagccaggagguuugccuagaagcagcc
acccuugaaagagugcguaauagcucacugaucgagcgcucuugcgccga
agaugaacggggcuaagcggucugccgaagcugugggauguaaaaaaaca
ucgguaggggagcguuccguguuagggagaaacgcgugcgugagccgcgu
uggacgaagcggaagcgagaaugucggcuugaguaacgcaaacauuggug
agaauccaaugccccgaaaaccuaaggguuccuccgcaagguucguccac
ggagggugagucagggccuaagaucaggccgaaaggcguagucgauggac
aacaggugaauauuccuguacuaccccuuguuggucccgagggacggagg
aggcuagguuagccgaaagaugguuaucgguucaaggacgcaaggugacc
cugggguaagaagggguagagaaaaugccucgagccaauguucgaguacc
aggcgcuacggcgcugaaguaaccgaugccauacucccaggaaaagcucg
aacgaccuucaacaaaaggguaccuguacccgaaaccgacacagguaggu
agguagagaauaccuaggggcgcgagacaacucucucuaaggaacucggc
aaaauagccccguaacuucgggagaaggggugcccccucacaaagggggu
cgaagugaccaggcccgggcgacuguuuaccaaaaacacaggucuccgca
aagucguaagaccauguaugggggcugacgccugcccagugccggaaggu
caaggaaguuggugaccugaugacaggggagccggcgaccgaagccccgg
ugaacggcggccguaacuauaacgguccuaagguagcgaaauuccuuguc
ggguaaguuccgacccgcacgaaaggcguaacgaucugggcacugucucg
gagagaggcucggugaaauagacaugucugugaagaugcggacuaccugc
accuggacagaaagacccuaugaagcuuuacuguucccugggauuggcuu
ugggcuuuuccugcgcagcuuagguggaaggcgaagaaggcccccuuccg
ggggggcccgagccaucagugagauaccacucuggaagagcuagaauucu
aaccuugugucaggaccuacgggccaagggacauucucagguagacaguu
ucuauggggcguaggccucccaaaagguaacggaggcgugcaaagguuuc
cucgggccggacggagauuggcccucgagugcaaaggcagaagggagcuu
gacugcaagacccacccgucgagcagggacgaaagucggccuuagugauc
cgacggugccgaguggaagggccgucgcucaacggauaaaaguuacucua
gggauaacaggcugaucuuccccaagaguucacaucgacgggaagguuug
gcaccucgaugucggcucuucgccaccuggggcuguaguauguuccaagg
guugggcuguucgcccauuaaagcgguacgugagcuggguucagaacguc
gugagacaguucgguccauauccggugugggcguuagagcauugagagga
ccuuucccuaguacgagaggaccgggaaggacgcaccucugguguaccag
uuaucgugcccacgguaaacgcuggguagccaagugcggagcggauaacu
gcugaaagcaucuaaguaguaagcccaccccaagaugagugcucuccua
..............<<<<<<<<<<.....<<..<<<<<<<<<<<......
..<<<<<<.....((.>>>.....<<<<<<.<.<<.))......>>....
.>>>>>>>...>>>....<<<....>>>........<<<<..........
...>>>>..........<<<<<<.....<......>......>>>>>.>.
..<.....<<....>>..<<<<<<.....<<.....>>....>>>>>>..
<<<....<<<<....>>>>.......<<.<<<<......<<<...<<<.<
<<<.<<<...<<.<<.....>>.>>((......<<<.....))>>>...>
>>...>>>>.>>>..>>>...>>>>...>>......<<<<<<<<......
...>>>>>>>>......<<<<<..((((>>>>>..>>>....>.>>.>>>
>>>>.>>...............<<....>>....>>.........<<<<.
...>>>>..................>>>>>>>>>>........<<<<..<
<<<...>>>>..>>>>...<.<........>.>.<<<<<<....<<<<<<
<<<<<<...<<<...<<.......>>...>>>...<<....>>..<<<<.
....>>>>.....>>>>>>>>>>>>..<<.<...<<<<<<.....<.<<<
<<<<..<<<....<<<<<<......>>>>>>.....>>>...<<<.<<<<
<........>>>>>>>>....>>>>>>>.>...<<<.....>>>......
>>>>>>......>.>>..<<<<<<....<<<<<....>>>>><<.<<<<<
<<....<<<<<<.....<<<...<<<<<<<<<..<<..............
.>>..>>>>>>>>>..>>.>.....>>>>>>..<<<<<<.........>>
>>>>..>>>>>>>..>>..<<<<<<<<<<......>>>>>>>>>>....<
<<......>>>...<<<<.<<<...<<<(((.....<<<<<<........
...<<..<<<<<<<<<<.........<<<.<<....<<.........>>.
...>>.........<<......>>...>>>.....>>>>>>>>>>.>>..
........))).....>>>>>>.>>>...>>>>>>><<<<<......>>>
>>....>>>>>><.<<<<<<...........<<<<<.<<....>>>>>>>
........>>>>>>..>.....>>>>>><......<<.....<<<<<<..
.....>>>>>><<<<....<<<<<.<<...<<<<<<...<<.....>>.>
>>>>>....((<<<<.<<...<<<...<<<....>>>...>>>...>>..
.<<<<<........>>>>>))<<<<<..<<<.<....<<<<....<<<<.
.<<<..<<<<<<<<<<.....[[[..>>>>><...<<<<<...<......
............<<<............>>>.....>..>>>>>....><.
.<<<<<....>>>>>...>>>>>>...>>>...>>>>.........>>>>
.....>....>.>>...>>>>>>>>>..>>.....<<......>>>>>>>
.<<<<.....>>>>..>>>>..<<<<....<<<<<<<<.<<.........
<.....<<<<<...............>>>>><<<<<<.......>>>>>>
............<<<<<<<<<..<<<.........>>>..<<<<<<<...
..<<<....>>>.......>>>>>>>.<<<<<.<<<..<<<<<<<..<<<
...<<..<<<<<<..<<<......>>>...>>>>>>..>>...>>>>>>>
>..>>>>><<<<<<.......>>>>>>........<...........<<<
<<<.....>>>>>>.....>....>>>>>..>>.>>>>>>>..>..>>.>
>>>>>>>.>>>>>>.....>.....<<<<<........>>>>>..<<<<<
<<<.<<<..<......<<<<.<<<<<<..<<<<<..<<<<<<<..<<.<<
<.<<<.<<<<<...........<<<<<...<<......<<<<<<<<....
>>>>>>>>...>>.............>>>.>>.>>>>>.>>>.>>>.>>.
..<<<<<.<<<..........>>>>>>>>.....>>>>>>>...>>>>>.
.<<<<.....>>>><<<<<<...........>>>>>>..<<...<<<<<<
<..<<<<<<.........>>>>>>....<<...(((>>....>>>>>>>.
..<<<<..<<<......>>>..>>>>.<<<....>>>.>>))).......
<<<<<<<.<<..))))..>>>>>>>>>.............>>>>..>>>>
>>.......<<<<...<<<<<<...<<.......>>...>>>>>>....>
>>.>.......<<<<<.<.<<<<..<<<<<<<<........>>>>>..>>
>.<<<<<.....>>>>>.....>>>>...>...>>>.>>....<<<<<<<
....>>>.>>>>....>...>>>>>>>>>>>....<<<<<<<...<.<<.
.<<<<<<<...............>>>>>>>.<<<<<...<<<<...<<<<
<<<<<<<]]].>>>>>>...>>>>>...>>>>.>>>>>....<<...<<<
<<<...........>>>>>>...>>..>>.>.......>>>>>>>....
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5h1s Cryo-EM structure of the large subunit of the spinach chloroplast ribosome.
Resolution3.5 Å
Binding residue
(original residue number in PDB)
G130 S131 R132 Q145 L147 K148 D193 K194 V197 K201 K202 K203 K204 R208 N209 I210 G211 H212 R213 Q214
Binding residue
(residue number reindexed from 1)
G43 S44 R45 Q58 L60 K61 D106 K107 V110 K114 K115 K116 K117 R121 N122 I123 G124 H125 R126 Q127
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component
External links
PDB RCSB:5h1s, PDBe:5h1s, PDBj:5h1s
PDBsum5h1s
PubMed27762343
UniProtP24613|RK21_SPIOL Large ribosomal subunit protein bL21c (Gene Name=RPL21)

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