Structure of PDB 1vqk Chain T Binding Site BS01 |
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>1vqk Chain 0 (length=2754)
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uaugccagcugguggauugcucggcucaggcgcugaugaaggacgugcca agcugcgauaagccauggggagccgcacggaggcgaagaaccauggauuu ccgaaugagaaucucuaacaauugcuucgcgcaaugaggaaccccgagaa cugaaacaucucaguaucgggaggaacagaaaacgcaaugugaugucguu aguaaccgcgagugaacgcgauacagcccaaaccgaagcccucacgggca auguggugucagggcuaccucucaucagccgaccgucucgacgaagucuc uuggaacagagcgugauacagggugacaaccccguacucgagaccaguac gacgugcgguagugccagaguagcggggguuggauaucccucgcgaauaa cgcaggcaucgacugcgaaggcuaaacacaaccugagaccgauagugaac aaguagugugaacgaacgcugcaaaguacccucagaagggaggcgaaaua gagcaugaaaucaguuggcgaucgagcgacagggcauacaaggucccucg acgaaugaccgacgcgcgagcguccaguaagacucacgggaagccgaugu ucugucguacguuuugaaaaacgagccagggagugugucugcauggcaag ucuaaccggaguauccggggaggcacagggaaaccgacauggccgcaggg cuugcccgagggccgccgucuucaagggcggggagccauguggacacgac ccgaauccggacgaucuacgcauggacaagaugaagcgugccgaaaggca cguggaagucuguuagaguugguguccuacaauacccucucgugaucuau guguaggggugaaaggcccaucgaguccggcaacagcugguuccaaucga aacaugucgaagcaugaccuccgccgagguagucugugagguagagcgac cgauugguccugucaaacuccaaacuuacagacgccguuugacgcgggga uuccggugcgcgggguaagccuguguaccaggaggggaacaacccagaga uagguuaagguccccaaguguggauuaaguguaauccucugaaggugguc ucgagcccuagacagccgggaggugagcuuagaagcagcuacccucuaag aaaagcguaacagcuuaccggccgagguuugaggcgcccaaaaugaucgg gacucaaauccaccaccgagaccuguccguaccacucauacugguaaucg aguagauuggcgcucuaauuggauggaaguaggggugaaaacuccuaugg accgauuagugacgaaaauccuggccauaguagcagcgauagucggguga gaaccccgacggccuaauggauaaggguuccucagcacugcugaucagcu gaggguuagccgguccuaagucauaccgcaacucgacuaugacgaaaugg gaaacggguuaauauucccgugccacuaugcagugaaaguugacgcccug gggucgaucacgcugggcaucgcccagucgaaccguccaacuccguggaa gccguaauggcaggaagcggacgaacggcggcauagggaaacgugauuca accuggggcccaugaaaagacgagcauaguguccguaccgagaaccgaca cagguguccauggcggcgaaagccaaggccugucgggagcaaccaacguu agggaauucggcaaguuagucccguaccuucggaagaagggaugccugcu ccggaacggagcaggucgcagugacucggaagcucggacugucuaguaac aacauaggugaccgcaaauccgcaaggacucguacggucacugaauccug cccagugcagguaucugaacaccucguacaagaggacgaaggaccuguca acggcgggggucuuaagguagcguaguaccuugccgcaucaguagcggcu ugcaugaauggauuaaccagagcuucacugucccaacguugggcccggug aacuguacauuccagugcggagucuggagacacccagggggaagcgaaga cccuauggagcuuuacugcaggcugucgcugaggacucucacuccgggag gaggacaccgauagccgggcaguuugacuggggcgguacgcgcucgaaaa gauaucgagcgcgcccuauggcuaucucagccggggacccggcgaagagu gcaagagcaaaagauagcuugacaguguucuucccaacgaggaacgcuga cgcgaaagcguggucuagcgaaccaauuagccugcuugaugcgggcaauu gaugacagaaaagcuacccuagggauaacagagucgucacucgcaagagc acauaucgaccgaguggcuugcuaccucgaugucgguucccuccauccug cccgugcagaagcgggcaagggugagguuguucgccuauuaaaggagguc gugagcuggguuuagaccgucgugagacaggucggcugcuaucuacuggg uguguaggugucugacaagaacgaccguauaguacgagaggaacuacggu ugguggccacugguguaccgguuguucgagagagcacgugccggguagcc acgccacacgggguaagagcugaacgcaucuaagcucgaaacccacuugg aaaagagacaccgccgaggucccgcguacaagacgcggucgauagacucg gggugugcgcgucgagguaacgagacguuaagcccacgagcacuaacaga ccaa |
..<<<<<<<<<<<.....((..((<<<<<<.[<<......<<<<<<.((. .((.>>>.....<<<<<<...<<<))..)).>>>......>>>>>>...> >>....<<<...>>>.....<<<<<.....>>>>>.>>...<<<<<<... ..<......>......>>>>>.>.........<<.....>>...<<<<<. ....<<.....>>....>>>>>...<<<...<<<...<<<<....>>>>. ....>>>....<<<<<<<<......<..<.....<<<<<<<......<<< <......>>>>.((......<<<.....))>>>....>>>>>>>...... >..>...>>>>>>.>>......<<<<<<<........>>>>>>>...... <<<<<.<<<<<<>>>>>..>>>......]..>>>>>>.)).......... .....<<....>>....))..........<<<.....>>>.......... .........>>>>>>>>>>>.......<<<<<<<<<<....<.<<<<..< <.........<<<<<....>>>>>.........>>..>>>>...>.>>>> >>>>>>...<<<........>>>.<<<<<<...<<<<<<<<<<<<<<..< <<...<<<<<...>>>>>...>>>...<<....>>....<<<<<...<<< <..>>>>...>>>>><<<<<<....>>>>>>...>>>>>>>>>>>>>>.< <.<...<<<<<<.....<<<<<<<<<..<<<....<<<<<<<....>>>> >>>.....>>>....<<<..<<.<<........>>>>.>>>....>>>>> >>>>...<<<.....>>>......>>>>>>......>.>>..<<<<<<.. ..<<<<<....>>>>><.<<<<<<...<<<.<<<<<<<<<...<<<.... .<<..<<.>>..>>...>>.>...>>>>>>>>>>>>.......>>>>>>. .>..<<<<<<.<<<.....>>>.>>>>>>....<<<......>>>...<< <<<<<...<<<(((.....<<<<<<.....<<...........<<<.<<< <<<<<<<.......<<<<<.<<...<<<<.......>>>>...>>..... ..<<<<......>>>>.>>>>>...>>>>>>>>>>>>>..........)) )>>....>>>>>>.>>>...>>>>>>><<<<<<<.......>>>>>..>> ....>>>>>><...<<<<<<<<......<<<<<<<<....>>>>>>>>.. .>>>>>>>>....>.....>>>>>><<.....<........<<<<<<... ....>>>>>><<<<<...<<<<..<<...<<<<<<...<<.....>>.>> >>>>....((<<<<<<...<<<<<<.<<.....>>..>>>>>>.....>> >..<<<<<........>>>>>))<<<<<<<<.......<<<...<<<<<< <<...<<<<<<<<<<<<<.[[>>>>>>><...<<<<<....<<<<<.... <<<<...>>>>.....>>>>>.....>>>>>....>......>>>>>>.. .>>>>>>>>.........>>>..>>>>>>>>.>>>..>>.....<<.... ..>>.>>>>..<<<.......>>>.>>>>>...<<<<.....<<<<<<<< .<<.........<.....<<<<<...............>>>>><<<<<<< <<.....>>>>>>>>>............<<<<<<<<<..<<<........ .>>>..<<<<<<<.....<<<....>>>.......>>>>>>>.<<<<<.< <<..<<<<<<<..<<<.....<<<<......>>>>.....>>>>>>>>.. >>>>><<...>>........<...........<<<<<.......>>>>>. ....>....>>>>>..>>.>>>>>>>..>..>>.>>>>>>>>.>>>>.>. ...>>.((.<<<<<<......))>>>>>>.<<<<<<<..(((.[[..... .<<<<.[[<<<<..<<<<<.<<<<<<<<..<<....>>...<<<<....> >>>.....>>>>>>>>..>>>>>...<<<.....>>>..<<<<<<..... ......>>>>>>..<<...<<<<<<<...<<<<<<..>>>>>>.....<< ...(((>>....>>>>>>>...<<<<<<<<<.........>>>>>>>>>. <<<....>>>.>>))).......<<<<<.<<<<<.>>>>>>>>>>>>>>> >..........>>>>..]]>>>>.......<<<<.<.<<<<<<...<<.. .....>>...>>>>>>...>>>>.>.......<<<<<..<<<<<..<<<< <<<<<......>>>>>>>..>>..<<<<.....>>>>......>>>>>.. ....>>>.>>....<<<<<<<....>>>.>>>>....]]..))).>>>>> >>....<<<<<<...<<<<..<<<<<<<<...............>>>>>> >><<<<<...<<<<...<<<<<<<<<<]]..>>>>>...>>>>>...>>> >.>>>>>..<<<....<<<<<...........>>>>>....>>>.>>>>. ......>>>>>>.....<<<<<<<<<.......>>>>>....<<<.<<<< <<<<....<<<<<..........>>>>>...>>>>.>>>>..>>>...>> >>.. |
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PDB | 1vqk Structural Insights into the Roles of Water and the 2' Hydroxyl of the P Site tRNA in the Peptidyl Transferase Reaction. |
Resolution | 2.3 Å |
Binding residue (original residue number in PDB) | S1 K2 Q3 P4 D5 K6 Q7 R8 K9 Q11 R12 R13 L16 H17 H20 K21 R24 T26 R32 R38 N39 R41 N43 A44 R52 G53 D54 L67 K69 L79 K81 T82 D83 V87 R89 D92 S94 N95 R97 D105 K107 R111 D116 D117 |
Binding residue (residue number reindexed from 1) | S1 K2 Q3 P4 D5 K6 Q7 R8 K9 Q11 R12 R13 L16 H17 H20 K21 R24 T26 R32 R38 N39 R41 N43 A44 R52 G53 D54 L67 K69 L79 K81 T82 D83 V87 R89 D92 S94 N95 R97 D105 K107 R111 D116 D117 |
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Enzyme Commision number |
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