Structure of PDB 1lth Chain T Binding Site BS01

Receptor Information
>1lth Chain T (length=313) Species: 1679 (Bifidobacterium longum subsp. longum) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGS
SFYPTVSIDGSDDPEICRDADMVVITAGPRQKPGQSRLELVGATVNILKA
IMPNLVKVAPNAIYMLITNPVDIATHVAQKLTGLPENQIFGSGTNLDSAR
LRFLIAQQTGVNVKNVHAYIAGEHGDSEVPLWESATIGGVPMSDWTPLPG
HDPLDADKREEIHQEVKNAAYKIINGKGATNYAIGMSGVDIIEAVLHDTN
RILPVSSMLKDFHGISDICMSVPTLLNRQGVNNTINTPVSDKELAALKRS
AETLKETAAQFGF
Ligand information
Ligand IDFBP
InChIInChI=1S/C6H14O12P2/c7-4-3(1-16-19(10,11)12)18-6(9,5(4)8)2-17-20(13,14)15/h3-5,7-9H,1-2H2,(H2,10,11,12)(H2,13,14,15)/t3-,4-,5+,6-/m1/s1
InChIKeyRNBGYGVWRKECFJ-ARQDHWQXSA-N
SMILES
SoftwareSMILES
CACTVS 3.341O[C@H]1[C@H](O)[C@@](O)(CO[P](O)(O)=O)O[C@@H]1CO[P](O)(O)=O
CACTVS 3.341O[CH]1[CH](O)[C](O)(CO[P](O)(O)=O)O[CH]1CO[P](O)(O)=O
ACDLabs 10.04O=P(O)(O)OCC1OC(O)(COP(=O)(O)O)C(O)C1O
OpenEye OEToolkits 1.5.0C(C1C(C(C(O1)(COP(=O)(O)O)O)O)O)OP(=O)(O)O
OpenEye OEToolkits 1.5.0C([C@@H]1[C@H]([C@@H]([C@](O1)(COP(=O)(O)O)O)O)O)OP(=O)(O)O
FormulaC6 H14 O12 P2
Name1,6-di-O-phosphono-beta-D-fructofuranose;
BETA-FRUCTOSE-1,6-DIPHOSPHATE;
FRUCTOSE-1,6-BISPHOSPHATE;
1,6-di-O-phosphono-beta-D-fructose;
1,6-di-O-phosphono-D-fructose;
1,6-di-O-phosphono-fructose
ChEMBLCHEMBL97893
DrugBankDB04551
ZINCZINC000004096694
PDB chain1lth Chain T Residue 320 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB1lth T and R states in the crystals of bacterial L-lactate dehydrogenase reveal the mechanism for allosteric control.
Resolution2.5 Å
Binding residue
(original residue number in PDB)
R158 K170 N171 H173 Y175
Binding residue
(residue number reindexed from 1)
R152 K164 N165 H167 Y169
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) H180
Catalytic site (residue number reindexed from 1) H174
Enzyme Commision number 1.1.1.27: L-lactate dehydrogenase.
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0004459 L-lactate dehydrogenase activity
GO:0016491 oxidoreductase activity
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
Biological Process
GO:0006089 lactate metabolic process
GO:0006090 pyruvate metabolic process
GO:0006096 glycolytic process
GO:0019752 carboxylic acid metabolic process
Cellular Component
GO:0005737 cytoplasm

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:1lth, PDBe:1lth, PDBj:1lth
PDBsum1lth
PubMed7656036
UniProtE8ME30|LDH2_BIFL2 L-lactate dehydrogenase 2 (Gene Name=ldh2)

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