Structure of PDB 1ldt Chain T Binding Site BS01

Receptor Information

>1ldt Chain T (length=223) Species: 9823 (Sus scrofa)

IVGGYTCAANSIPYQVSLNSGSHFCGGSLINSQWVVSAAHCYKSRIQVRL
GEHNIDVLEGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRV
ATVSLPRSCAAAGTECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKS
SYPGQITGNMICVGFLEGGKDSCQGDSGGPVVCNGQLQGIVSWGYGCAQK
NKPGVYTKVCNYVNWIQQTIAAN

Ligand information

• Ligand ID: CA
• InChI: InChI=1S/Ca/q+2
• InChIKey: BHPQYMZQTOCNFJ-UHFFFAOYSA-N
• SMILES:
  CACTVS 3.341: [Ca++]
  ACDLabs 10.04
  OpenEye OEToolkits 1.5.0: [Ca+2]
• Formula: Ca
• Name: CALCIUM ION
• DrugBank: DB14577
• PDB chain: 1ldt Chain T Residue 1007

Receptor-Ligand Complex Structure

Structure summary

• PDB: 1ldt The three-dimensional structure of recombinant leech-derived tryptase inhibitor in complex with trypsin. Implications for the structure of human mast cell tryptase and its inhibition.
• Resolution: 1.9 Å
• Binding residue (original residue number in PDB): E70 N72 V75 E77 E80
• Binding residue (residue number reindexed from 1): E52 N54 V57 E59 E62
• Annotation score: 4

Enzymatic activity

• Catalytic site (original residue number in PDB): D102 G193 S195 G196
• Catalytic site (residue number reindexed from 1): D84 G175 S177 G178
• Enzyme Commision number: 3.4.21.4: trypsin.

Gene Ontology

Molecular Function

• GO:0004252 serine-type endopeptidase activity
• GO:0008236 serine-type peptidase activity
• GO:0046872 metal ion binding

Biological Process

• GO:0006508 proteolysis
• GO:0007586 digestion

Cellular Component

• GO:0005576 extracellular region
• GO:0005615 extracellular space

External links

• PDB: RCSB:1ldt, PDBe:1ldt, PDBj:1ldt
• PDBsum: 1ldt
• PubMed: 9242660
• UniProt: P00761|TRYP_PIG Trypsin