Structure of PDB 6zu5 Chain SW0 Binding Site BS01

Receptor Information
>6zu5 Chain SW0 (length=127) Species: 235221 (Paranosema locustae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MNRLAATCKAINNANRSGKRQVLIRFVTKTTRKFLEKMQVCGYISTLTYI
DDHRQGKVIIGLNGRLNKCGAICPNYCLTLKDVEKFKDKILPARQFGHLI
LNTSKGMIDHNECVTMKSGGEVLGFFY
Ligand information
>6zu5 Chain S60 (length=1336) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
accagguugauucugccugacgugugcgcuagucuuggggacuuagccau
gcaagccagcgaagcgcggagcggcggacggcucaguaggacggcgauaa
uccacccgcagcagagacaaggauaaccgcggcaagcugcggcuaagaca
uggacaggcugcggcgcggggaggcgcgggcagcggacagggagcggcug
cggcggaguugcuggcccaucagcugguagguaggguaagggccuaccua
ggcgacgacgggugacggggggugagagcccggaaccggagagggagccu
gagaaacagcucccacguccaaggacggcagcaggcgcggaacuugccca
aucccggcgggggaggcagccacaagacgucgcacggcaaaggagugcga
cuggagggcaagucuggugccagcagccgcgauuccagcuccaggagcgc
acaugaguguugcugcaguuaaaacguccguagucggccccgcgcuguga
ggaaaccgcggggcccaaggcggcgggcagcacgggagcgggggcgacag
gaacggacaacggccgcgggauccgggggcgagaggugaaaaucggggac
cccgcggggacgggcggaagcgaaggcggcggccggggacguguccguug
aucaaggacgaaggccggaggaucaaagaugauuagauaccgucguaguu
ccggcaguaaacgaugccgacggggcgaggccagggggcuguguccggga
gaaauuggaguguuugggcucuggggauaguacggucgcaagacagaaac
uuaaagaaauugacggaaggacaccacaaggaguggagugugcggcuuaa
uuugacucaacgcggggcagcuuaccagggccggaugcgcagggaguggu
gcauggccguuugcaacacguggggugaccugucugguugauuccgacaa
cgcgugaggccuggggugcagcaggcugugcgacgggcggcggcaagcug
caggagggcaggcgaaaacaggucagugaugcccucagaugcucugggcu
gcacgcgcacuacaauggcgcggcgagcgggagugccgggaggcgcgggc
gaggccguggcgcagcagggaugggggccuggaagggugcccugaacgag
gaauuccuaguagccgcgggucaccaagccgcggcgaaugagucccuguu
cuuuguacacaccgcccgucacuaccuaagauggaugugcaggcgaggag
gcugggcaggcacccgagccugugcaacuagauaagguauaagucguaac
aaggcugcaguaggugaaccugcggcaggaucacua
..<<<<<.[.((((>>>>>.<<<<<<<<<..<<<<<<<<......<<<.<
<<..<<<.<<...<..>...>>>>>......<<........<<<<<<<..
<<<..<<<<<<<........<.....<<<<<<....>>>>>>......>.
.......<<<<<..<<<<......>>>>.>>>>>............>>>>
>>>.>>>>>>>>>>.<<<....<<<..<<<<<<<<.......>>>>>>>>
>>>......>>>...<<<.<<<<....>>>>....>>>.>>.<<<<<<..
........>>>>>>.<<<<....>>>>...>>>>>>.........<<<..
..<<<....>>>..>>>..>>.>>>>>>...<<<<.........>>>>..
<<<<<((......<<<<.....<<..))>>....>>>>.>>>>>..>>>>
>>>>>..........<<<((.....<<<<...<<<.<<<<<<<.<<<<<.
<....<<<<.<.........>.>>>>.>..>>>>>..>>>.>>>>....<
<<<<<..<..<<<<<<<..<.<<<<.<<<...<<........>>......
>>>.>>>.>.>........<<....>>.>>>>>>>.>..>>>.>>>...>
>>...>>>>....<<<<<<<...<...<<<<.<.....>.>>>>...>>>
>>>>>..........<<<.<<.<<<<<.<<<<....>>>>.>>>>>..<<
..))>>...>>.....>>>.>>>.<<........<<<....>>>......
>>..)))).]<<<<<.<<<<<<<..<<.<<<<<<..<<<<<<<<<<....
..<<........>>..........<<<<<<<....<<..>>..<<<.<<<
..<<.<<<<<<....<<.<<<<<<....>>>...<<<......>>>...>
>>.>>....<<<<..<<<<<<<..>>>>>>>.....<<<<<.....>>>>
>.......>>>>....>>>.>>>.....>>>>>>>>....>>>>>>>...
>>.>>>>>>>>.....<.<<<<<<...<....<<<<<....>>>>>....
>..>>>>>>.>...........<<<.<<<......>>>.>>>........
..>>>>>>....<<<<<<<.........>>>>>>>......>>...>>>>
>>>>>>.>>....<..<<.<..<<<<<.<...<<.<<<<<<<<<..<<..
<<<.....>>>..>>..>>>>>>>>>.>>...>.>>>>>...>.>>...>
.....<<<.<<<<<....>>>>>.>>>.........
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6zu5 Differences in structure and hibernation mechanism highlight diversification of the microsporidian ribosome.
Resolution2.9 Å
Binding residue
(original residue number in PDB)		M1 R3 A6 K9 N13 R25 T28 K29 R54 Q55 K68 A71 I72 C73 Y76 C77 T79 L80 K85 K89 I90 N102 S104 K105 K117 G119 E121 Y127
Binding residue
(residue number reindexed from 1)		M1 R3 A6 K9 N13 R25 T28 K29 R54 Q55 K68 A71 I72 C73 Y76 C77 T79 L80 K85 K89 I90 N102 S104 K105 K117 G119 E121 Y127
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sat Feb 22 11:41:20 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6zu5', asym_id = 'SW0', bs = 'BS01', title = 'Differences in structure and hibernation mechani...t diversification of the microsporidian ribosome.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='6zu5', asym_id='SW0', bs='BS01', title='Differences in structure and hibernation mechani...t diversification of the microsporidian ribosome.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003735,0005840,0006412', uniprot = '', pdbid = '6zu5', asym_id = 'SW0'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412', uniprot='', pdbid='6zu5', asym_id='SW0')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>