Structure of PDB 6ywy Chain SS Binding Site BS01

Receptor Information
>6ywy Chain SS (length=81) Species: 5141 (Neurospora crassa) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KRSVWKGPHIVPLPIQRPEPGKKIAPIRTQARSATILPNFVGLKFQVHNG
KDYIDLTVTEEMVGHKLGEFSATRKPFIWGK
Ligand information
>6ywy Chain aa (length=1435) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
auagaugaguuuggugauggcucugauugaacacuguccaaauacuugac
acaugcuaaucgaacguuuaauuuuggcucuuaauuaaaagugguguaca
ggugaguauaauauuuuuucgcuuaacuuaaagugaaggcaaauccuuca
uauugcaaaaggauaucuauauccgcuuuaagaggaugagaaaaguuuca
gagauagguaguuguuaaggucauggcuuaacaagccaauaauucucuua
gucgaagcugaaaaggcugaucgaccacauugggaaugaaaaaaucccaa
ggcaaauagguacagcagugaggaaucuuggucaaugggcccacgccuga
acugguaacuuggaggaaugagacgucgauuuaucgaguaaaauucugua
uacauauugauaaugacaauauguacauuugucuugacuaauuacgugcc
agcagucgcggcaauacguaagagacuaguguuaaucaucauaaauaggu
uuaaaggguacucagacggaaaaauucgcccaaauauaggggacaauuuu
ucuagaguuuuauguaagaaggucguacucuagaguggagagauaaaauu
cugugauaccuaggggacggguaaaggcgaaggcaaucuuuuauguaaaa
acugacgucgaaggacgaaggcaaagggaacaaaaaggauuagauacccc
aguagucuuugcagacaauuaugaaugccauagguuagauuuuuaauuua
gucuauaaaugaaaguguaagcauuucaccucaagaguaaggcggcaacg
caggaacugaaaucacuagaccguuucugacaccagcaaugaaguauguu
auuuaauucggugacccacgaaaaaccuuaccacaauuugaauauuaauu
auuaauacaaguguugcacggcugucuucaguugauguugcgaaacugug
guucguuccauggaauuaacguaaacccuugcuuuauuuguaaauauuau
aaagcaguucaccuuuauauaggaaaugauaaaagggaucaagacaaguc
aucauggccuaaauauugugggcuauagacgugccacauuuuccuaaaca
aagagaugcaaaaaugugaauuuuagcuaaucucaaaaaauaggauaaaa
auauacaaggauuguagucugaaauucgacugcaugaauaagaaauugcu
aguaaucgugaaucaccaugacacggugaauauucccucggauugguacu
aaccacucgucacaugcugaaaggagugcgugcaauaaguuugcuuuucu
guuauaaguaaguagacauauagguuuagauguuauaauaggauccuucg
uaugcgcggcucugauuaguguuaagucgaaauacgguucguguagugga
aguugcacgggacuuaucaauguugaacaauacga
......((((..<<<<<<.))))<<<<<.<<<<<..<<<<<.<<.....<
<<.<<<..<<<..<<.<<<<<<<..<<.>>..>>>>>>>.>>>>>.....
.<<.........<<<<<<<..<<...<<<<<<<<<<<<<.....>>>>>.
..........<<<<<<..>>>>>>>>>>>>>>.>>....>>>>>>>...<
<<<<..<<<..<<<<<<<<.......>>>>>>>>>>>......>>>>>..
<<<<.<<<<.....>>>>...>>>>.>>.<<<<<...........>>>>>
.<<......>>...>>>>>>.........<<<....<<<<....>>>>..
>>>..>>..>>>>>.<<<<......<<<<<..>>>>>.....>>>>....
<<<<<<<<<.......>>>>>>>>>.....<<<<<(((...<<<<<....
.<<.)))>>.......>>>>>>>>>>..>>>>>>>>>>.........<<<
((.....<<..<..<<<.<<<<<<<<.<<<<.......>>>..>>>>>>>
>>...<<<<<......<<<<<<<.<..<<<<<<.<<<..<<<......>>
>.....>>>>>>>>>..>........<<....>>.>>>>>>>......>>
>>>...>>>...>.>>....<<<<<<...<<.....<<.........>>.
....>>>>>>>>..........<<<<<<.<<<<<<<<<<<<...>>>>>>
>>>>>>..<<..))>>....>>>>>>.>>>.<<........<<<....>>
>......>>..>>>>>><<<<<...<<<<<....<<<<<<...<<<<<<<
<<......<<........>>..........<<<<<<<.....<<<<<<<.
>>>>>>>..<<.<<...<.<<<<<<<....<<<<<<<<<....>>>.<<<
<......>>>>...>>>>>>.....<<<<<<<<<<<<...........>>
>>>>>>..<<.<<<......>>>....>>....>>>>.....>>>.>>>.
..>.>.>>>>....>>>>>>>...>>.>>>>>>>.......<<<<<....
..<<<..<...<<<<....>>>>...>....>>>......>>>>>.....
.......<....<<<<<<<........>>>>>>>....>.....>>>>>>
....<<<<<<...........>>>>>>..........>>>>>..>>>.>>
....<.<<<.<..<<<<<<<..<<<<<.<<<<<<....<.......<<<<
<<<<<<<.....<<<<<......>>>>>....>>>>>>>>>>>.....>.
..>>>>>>>>>>>..>>>>>>>...>.>>>..>.....<<<<<<<<<...
.>>>>>>>>>.........................
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6ywy Analysis of translating mitoribosome reveals functional characteristics of translation in mitochondria of fungi.
Resolution3.05 Å
Binding residue
(original residue number in PDB)		K9 R10 S11 V12 W13 K14 H17 Q38 R40 S41 G58 K59 K74 G76 T81 R82 K83 F85 W87
Binding residue
(residue number reindexed from 1)		K1 R2 S3 V4 W5 K6 H9 Q30 R32 S33 G50 K51 K66 G68 T73 R74 K75 F77 W79
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sat Nov 16 05:30:14 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6ywy', asym_id = 'SS', bs = 'BS01', title = 'Analysis of translating mitoribosome reveals fun...eristics of translation in mitochondria of fungi.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='6ywy', asym_id='SS', bs='BS01', title='Analysis of translating mitoribosome reveals fun...eristics of translation in mitochondria of fungi.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003723,0003735,0005840,0006412', uniprot = '', pdbid = '6ywy', asym_id = 'SS'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003723,0003735,0005840,0006412', uniprot='', pdbid='6ywy', asym_id='SS')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>