Structure of PDB 6zu5 Chain SO0 Binding Site BS01

Receptor Information
>6zu5 Chain SO0 (length=128) Species: 235221 (Paranosema locustae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KDLVFGVAHILATSNDTFVHITDLTGSETVCKVSGGMKVKAHRDESSPYA
AMLAAQDAAQKAIERGITAVHVKLRGRGGVKSAIPGPGAQAALRALIRNG
LKLGRVEDATPTPTDRTRRKGGRRGRRL
Ligand information
>6zu5 Chain S60 (length=1336) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
accagguugauucugccugacgugugcgcuagucuuggggacuuagccau
gcaagccagcgaagcgcggagcggcggacggcucaguaggacggcgauaa
uccacccgcagcagagacaaggauaaccgcggcaagcugcggcuaagaca
uggacaggcugcggcgcggggaggcgcgggcagcggacagggagcggcug
cggcggaguugcuggcccaucagcugguagguaggguaagggccuaccua
ggcgacgacgggugacggggggugagagcccggaaccggagagggagccu
gagaaacagcucccacguccaaggacggcagcaggcgcggaacuugccca
aucccggcgggggaggcagccacaagacgucgcacggcaaaggagugcga
cuggagggcaagucuggugccagcagccgcgauuccagcuccaggagcgc
acaugaguguugcugcaguuaaaacguccguagucggccccgcgcuguga
ggaaaccgcggggcccaaggcggcgggcagcacgggagcgggggcgacag
gaacggacaacggccgcgggauccgggggcgagaggugaaaaucggggac
cccgcggggacgggcggaagcgaaggcggcggccggggacguguccguug
aucaaggacgaaggccggaggaucaaagaugauuagauaccgucguaguu
ccggcaguaaacgaugccgacggggcgaggccagggggcuguguccggga
gaaauuggaguguuugggcucuggggauaguacggucgcaagacagaaac
uuaaagaaauugacggaaggacaccacaaggaguggagugugcggcuuaa
uuugacucaacgcggggcagcuuaccagggccggaugcgcagggaguggu
gcauggccguuugcaacacguggggugaccugucugguugauuccgacaa
cgcgugaggccuggggugcagcaggcugugcgacgggcggcggcaagcug
caggagggcaggcgaaaacaggucagugaugcccucagaugcucugggcu
gcacgcgcacuacaauggcgcggcgagcgggagugccgggaggcgcgggc
gaggccguggcgcagcagggaugggggccuggaagggugcccugaacgag
gaauuccuaguagccgcgggucaccaagccgcggcgaaugagucccuguu
cuuuguacacaccgcccgucacuaccuaagauggaugugcaggcgaggag
gcugggcaggcacccgagccugugcaacuagauaagguauaagucguaac
aaggcugcaguaggugaaccugcggcaggaucacua
..<<<<<.[.((((>>>>>.<<<<<<<<<..<<<<<<<<......<<<.<
<<..<<<.<<...<..>...>>>>>......<<........<<<<<<<..
<<<..<<<<<<<........<.....<<<<<<....>>>>>>......>.
.......<<<<<..<<<<......>>>>.>>>>>............>>>>
>>>.>>>>>>>>>>.<<<....<<<..<<<<<<<<.......>>>>>>>>
>>>......>>>...<<<.<<<<....>>>>....>>>.>>.<<<<<<..
........>>>>>>.<<<<....>>>>...>>>>>>.........<<<..
..<<<....>>>..>>>..>>.>>>>>>...<<<<.........>>>>..
<<<<<((......<<<<.....<<..))>>....>>>>.>>>>>..>>>>
>>>>>..........<<<((.....<<<<...<<<.<<<<<<<.<<<<<.
<....<<<<.<.........>.>>>>.>..>>>>>..>>>.>>>>....<
<<<<<..<..<<<<<<<..<.<<<<.<<<...<<........>>......
>>>.>>>.>.>........<<....>>.>>>>>>>.>..>>>.>>>...>
>>...>>>>....<<<<<<<...<...<<<<.<.....>.>>>>...>>>
>>>>>..........<<<.<<.<<<<<.<<<<....>>>>.>>>>>..<<
..))>>...>>.....>>>.>>>.<<........<<<....>>>......
>>..)))).]<<<<<.<<<<<<<..<<.<<<<<<..<<<<<<<<<<....
..<<........>>..........<<<<<<<....<<..>>..<<<.<<<
..<<.<<<<<<....<<.<<<<<<....>>>...<<<......>>>...>
>>.>>....<<<<..<<<<<<<..>>>>>>>.....<<<<<.....>>>>
>.......>>>>....>>>.>>>.....>>>>>>>>....>>>>>>>...
>>.>>>>>>>>.....<.<<<<<<...<....<<<<<....>>>>>....
>..>>>>>>.>...........<<<.<<<......>>>.>>>........
..>>>>>>....<<<<<<<.........>>>>>>>......>>...>>>>
>>>>>>.>>....<..<<.<..<<<<<.<...<<.<<<<<<<<<..<<..
<<<.....>>>..>>..>>>>>>>>>.>>...>.>>>>>...>.>>...>
.....<<<.<<<<<....>>>>>.>>>.........
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6zu5 Differences in structure and hibernation mechanism highlight diversification of the microsporidian ribosome.
Resolution2.9 Å
Binding residue
(original residue number in PDB)		H16 N22 D23 F25 H27 G33 S34 E35 T36 K39 S41 G43 M44 H49 R50 E52 R82 G86 P118 T119 P120 T121 D122 R123 T124 R125 R126 K127 G129 R130 R131 R133 R134
Binding residue
(residue number reindexed from 1)		H9 N15 D16 F18 H20 G26 S27 E28 T29 K32 S34 G36 M37 H42 R43 E45 R75 G79 P111 T112 P113 T114 D115 R116 T117 R118 R119 K120 G122 R123 R124 R126 R127
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Mon Dec 2 20:19:42 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6zu5', asym_id = 'SO0', bs = 'BS01', title = 'Differences in structure and hibernation mechani...t diversification of the microsporidian ribosome.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='6zu5', asym_id='SO0', bs='BS01', title='Differences in structure and hibernation mechani...t diversification of the microsporidian ribosome.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003735,0005840,0006412', uniprot = '', pdbid = '6zu5', asym_id = 'SO0'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412', uniprot='', pdbid='6zu5', asym_id='SO0')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>