Structure of PDB 7wtr Chain SO Binding Site BS01

Receptor Information
>7wtr Chain SO (length=128) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
NSQVFGVARIYASFNDTFVHVTDLSGKETIARVTGGMKVKADRDESSPYA
AMLAAQDVAAKCKEVGITAVHVKIRATGGTRTKTPGPGGQAALRALARSG
LRIGRIEDVTPVPSDSTRKKGGRRGRRL
Ligand information
>7wtr Chain C2 (length=1298) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uaucugguugauccugccaguagucauaugcuugucucaaagauuaagcc
augcaugucuaaguauaagcaaauacagugaaacugcgaauggcucauua
aaucaguuaucguuuauuugauaguuccucuacaugguauaacuguggua
auucuagagcuaauacaugcuuaaaaucucgacccuuuggaagagaugua
uuuauuagauaaaaaaucaaugucuucggacucuuugaugauucauaaua
acuuuucgaaucgcauggccuugugcuggcgaugguucauucaaauuucu
gcccuaucaacuuucgaugguaggauaguggccuaccaugguuucaacgg
guaacggggaauaaggguucgauuccggagagggagccugagaaacggcu
accacauccaaggaaggcagcaggcgcgcaaauuacccaauccuaauuca
gggagguagugacaauaaauaacgauacagggucuuguaauuggaaugag
uacaauguaaauaccuuaacgaggaacaauuggagggcaagucuggugcc
agcagccgcgguaauuccagcuccaauagcguauauuaaaguuguugcag
uuaaaaagcucguaguugaacuuugggcccgguuggccggucggauuucc
aacggggccuuuccuucuggcuaaccuugaguccuuguggcucuuggcga
accaggacuuuuacuuugaaaaaauuagaguguucaaagcaggcguauug
cucgaauauauuagcauggaauaauagaauaggacguuugguucuauuuu
guugguuucuaggaccaucguaaugauuaauagggacggucgggggcauc
aguauucaauugucagaggugaaauucuuggauuuauugaagacuaacua
cugcgaaagcauuugccaaggacguuuucauuaaucaagaacgaaaguua
ggggaucgaagaugaucagauaccgucguagucuuaaccauaaacuaugc
cgacuagggaucgggugguguuuuuuuaaugacccacucggcaccuuacg
agaaaucaaagucuuuggguucuggggggaguauggucgcaaggcugaaa
cuuaaaggaauugacggaagggcgcccuuuguaccgcccgucgcuaguac
cgauugaauggcuuagugaggccucaggaucugcuuagagaagggggcaa
cuccaucucagagcggagaauuuggacaaacuuggucauuuagaggaacu
aaaagucguaacaagguuuccguaggugaaccugcggaaggaucauua
...<<<<<...[[[[>>>>>[[[[.((((((................[[[
.[[[..<<....<<....<<.......>>...>>.>>......{{.....
...[[[..{{..{{....[[[...............<<....<<.<<<..
...>>>.>>.....>>.........<<<<<..<<....>>..>>>>>[..
.((((((......<<<<<<<<<<<....>>>..............)))))
).....]...<<<<..<<<.....>>>.>>>>....]]]...}}}}..]]
].<<<....<<<....<<<<<<<<.......>>>>>>>>>>>......>>
>...<<<.<<<<....>>>>....>>>.}}.<<.<<<..........>>>
.>>.<.<<<..>>>.>...]]]]]].........<<<....<<<.....>
>>..>>>...............<<<<<<<<....>>>>>.>>>......<
<..<...........>..>>.........<<<<<........<<<<.<<<
.<<....>>>>>....>>>>.>>>>>..))))))]]]].........[[[
{{.......{{...[[[.{{....<<<<<<.<<<<<....<..>....>>
>>>.>>>>>>.....<<<<<.<..<<..<<<<<.....>>>>>..>>..>
.>>>>>....<<<<<.<<.......<<...<.......>..<<<.....>
>>....>>......>>.>>..>>>.........[[[..((((((((....
>>>>>>>>.)))))))).]]].....}}....<<<<<<.<<...<<<<..
<<..<<<<<<.<...<<<......>>>......>.>>>>>>..>>.....
..<<....>>...>>>>...>>>>>.>>>...]]]...}}......<<<<
<<<...<...<<<<.........>>>>...>>>>>>>>..........<<
<.<<.<<<..<<<<<<<<.<<<........>>>>>>>>>>>..>>>...<
<..}}>>...>>.....>>>.]]].<<<......<<<<....>>>>....
>>>..]]]].....<...<<<<..>>>>..>.<<<...<<.<..<<<<.<
<..<<<<<<<<<<.<<<..<.<<..<...<<<<<<<.<<<<.<<<<....
>>>>.>>>>.>>>>>>>...>..>>.>..>>>.>>>>>>>>>>.>>.>>>
>...>.>>......>>><<<<<<<<<....>>>>>>>>>.........
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7wtr The nucleoplasmic phase of pre-40S formation prior to nuclear export.
Resolution3.5 Å
Binding residue
(original residue number in PDB)		R18 Y20 N24 D25 F27 H29 G35 K36 E37 T38 R41 T43 D51 R52 R84 P122 S123 D124 S125 T126 R127 K129 G131 R132 R133 R136
Binding residue
(residue number reindexed from 1)		R9 Y11 N15 D16 F18 H20 G26 K27 E28 T29 R32 T34 D42 R43 R75 P113 S114 D115 S116 T117 R118 K120 G122 R123 R124 R127
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003729 mRNA binding
GO:0003735 structural constituent of ribosome
Biological Process
GO:0000028 ribosomal small subunit assembly
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0002181 cytoplasmic translation
GO:0006364 rRNA processing
GO:0006412 translation
GO:0042254 ribosome biogenesis
Cellular Component
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005730 nucleolus
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005840 ribosome
GO:0022627 cytosolic small ribosomal subunit
GO:0030686 90S preribosome
GO:0032040 small-subunit processome
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:7wtr, PDBe:7wtr, PDBj:7wtr
PDBsum7wtr
PubMed36321656
UniProtP06367|RS14A_YEAST Small ribosomal subunit protein uS11A (Gene Name=RPS14A)

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