Structure of PDB 4v3p Chain SK Binding Site BS01

Receptor Information

>4v3p Chain SK (length=119) Species: 4565 (Triticum aestivum)

IFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLASQDVA
QRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDV
TPVPTDSTRRKGGRRGRRL

Ligand information

>4v3p Chain S1 (length=1743)

uaccugguugauccugccaguagucauaugcuugucucaaaguuaagcca
ugcaugugcaaguaugaaccaauuugaacugugaaacugcgaauggcuca
uuaaaucaguuauaguuuguuugauggacucggauaaccguaguaauucu
agagcuaauacgugcaacaaaccccgacuucugggaggggcgcauuuauu
agauaaaaggcugacgcgggcucugcucgcugauccgaugauucaugaua
acucgacggaucgcacggccuucgugccggcgacgcaucauucaaauuuc
ugcccuaucaacuuuaugguaggauaggggccuaccaugguggugacggg
ugacggagaauuaggguucgauuccggagagggagccugagaaacggcua
ccacauccaaggaaggcagcaggcgcgcaaauuacccaauccugacacgg
ggagguagugacaauaaauaacaauaccgggcgcauuagugucugguaau
uggaaugaguacaaucuaaaucccuuaacgaggauccauuggagggcaag
ucuggugccagcagccgcgguaauuccagcuccaauagcguauauuuaag
uuguugcaguuaaaaagcucguaguuggaccuugggccgggucggccggu
ccgccucacggcgagcaccgaccuacucgaccccggcaucgcgcuccuag
ccuuaauuggccgggucguguuuccgguuagagugcucaaagcaagccau
cgcucuggauacauuagauuccgguccuauuguguuggccuucgggaucg
gaguaaugggacagucgggggcauucguauuucauagucagaggugaaau
ucuuggauuuaugaaagacgaacaacugcgaaagcauuugccaaggaugu
uuucauuaaucaagaacgaaaguugggggcucgaagacgaucagauaccg
uccuagucucaaccauaaacgaugccgaccagggaucggcggauguugcu
uauaggacuccgccggcaccuuagagaaaucaaagucuuuggguuccggg
gggaguauggucgcaaggcugaaacuuaaaggaauugacggaagggcacc
accaggcguggagccugcgcuuaauuugacucaacacggggaaacuuacc
agguccagacauagcaaggauugacagacugagagcucuuucuugauucu
augggugguggugcauggccguucuuaguugguggagcgauuugucuggu
uaauuccguuaacgaacgagaccucagccugcuaacuagcuaugcggagc
caucccuccgcagcuagcuucuuagagggacuauggccguuuaggccacg
gaaguugaggcaauaacaggucugucaugcccuuaauguucugggcgcac
gcgcgcuacacugauguauucaacgaguauauagccuuggccgacaggcc
cggguaaucuugggaaauuucaucgugauggggauagaucauugcaauug
uuggucuucaacgaggaaugccuaguaagcgcgagucaucagcucgcguu
gacuacgucccugcccuuuguacacaccgcccgucgcuccuaccgauuga
augguccggugaaguguucggaucgcggcgacgggggcgguucgccgccc
ccgacgucgcgagaaguccauugaaccuuaucauuuagaggaagcagaag
ucguaacaagguuuccguaggugaaccugcggaaggaucauug

...<<<<<.{.[[[[>>>>>.<<<..<<<<<...<...........<<<.
<<<...<...<<.....<<.<.......(>>>....>>>.......<<..
......<<<..<<..........<<<....<<)....<..<<<.....>>
>..>......>>.........<<<<..<<...>>..>>>>.....<<<<<
<.....((((((((.<<<<<<...>>>>>>...............>>>>>
>.....<...<<<<.<<.<......>.>>>>>>.>>>>.......>>..>
>>.<<<....<<<...<<<<<<.........>>>>>>.>>>......>>>
...<<<<<<<<....>>>>...>>>>.>>.<<.<<<..........>>>.
>>.<.<<....>>.>...>>>>>>.........<<<...<<<<<...>>>
>.>>>>.........>.....<<<<<<<<<<<<<....>>>>>>>>>>.>
>>.......<.................>..........<<<<<((.....
.<<<<.....<<..))>>.......>>>>.>>>>>..>>>>>.>>>....
......<.<[[.....<.<<...<<<.........<..<<..........
.........................>>.....><<<.<.<<<<..<<<.<
<<......>>>.>>>.>>>>.>.>>>.<<<<.<<<.<<<.<<<.<....>
.>>>.>>>.>>>.>>>>.<<<<<<<<<<......)))))))).>>>>>>>
>>>....<<<<<<.<<...<<<<..<<..<<<<<<<<...<<<......>
>>......>>>>>>>.>.>>......<<<....>>>..>>>>..>>.>>>
.>>>...>>>...>>.>....<<<<<<<...<...<<<<.........>>
>>...>>>>>>>>..........<<<.<<.<<<..<<<<<<<<.<<<...
.....>>>>>>>>>>>..>>>..<<..]]>>...>>.....>>>.>.>.<
<<......<<<<....>>>>....>>>..]]]].}<<<<<.<<<<<<<..
<<.<<<<<<..<<<.<<<<<......<<........>>..........<<
<<<........<....<<....<<............>>........>>..
..>......<<<..<<.<<<<<.....<<<.<<<<<....>>>...<<<.
.....>>>...>>.>>>......<<<...<.<<<<..<<<<<<<<<<<<.
.....>>>>>>>..>>>>>..>>>>.>........<<.......>>....
.....>>>.......>>.>>>.....>>>>>........>>>>>..>..>
>>>.>>>.....<<<<.<<..................<<<<......>>>
.>..............>.>.>>>>.........<.<<<<<<.........
.>>>>>>>.........>>>>>>....<<<<<<<<<.....>>>>>>>>>
......>>...>>>>>>>>>>.>>.......<<.<.<<..<.<<...<<<
<<<<<..<<<..<<<<......<<<<<<<<.<<<<<<<<<....>>>>>>
>>>.>>>>>>>>......>>>>..>>>..>>>>>>>>..>>.>..>>..>
.>>.........<<<<<<<<<....>>>>>>>>>.........

Receptor-Ligand Complex Structure

Structure summary

• PDB: 4v3p The molecular structure of the left-handed supra-molecular helix of eukaryotic polyribosomes.
• Resolution: 34.0 Å
• Binding residue (original residue number in PDB): H42 L46 R49 T51 M59 K62 D64 R65 D66 E67 Y71 A72 A73 V134 T136 D137 G143
• Binding residue (residue number reindexed from 1): H11 L15 R18 T20 M28 K31 D33 R34 D35 E36 Y40 A41 A42 V103 T105 D106 G112

Gene Ontology

--> -->

UnboundLocalError

Python 3.6.8: /usr/bin/python3 Fri Nov 15 15:46:13 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1435     title=pdb2title(pdbid)

   1436     if bs.startswith("BS"):

=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

   1438     else:

   1439         if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '4v3p', asym_id = 'SK', bs = 'BS01', title = 'The molecular structure of the left-handed supra-molecular helix of eukaryotic polyribosomes.'

 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='4v3p', asym_id='SK', bs='BS01', title='The molecular structure of the left-handed supra-molecular helix of eukaryotic polyribosomes.')

   1295         display_ec(ec,csaOrig,csaRenu)

   1296     if go:

=> 1297         display_go(go,uniprot,pdbid,asym_id)

   1298     return pubmed,uniprot

   1299 

global display_go = <function display_go>, go = '0003735,0005840,0006412', uniprot = '', pdbid = '4v3p', asym_id = 'SK'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412', uniprot='', pdbid='4v3p', asym_id='SK')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>