Structure of PDB 6zu5 Chain SGG Binding Site BS01

Receptor Information
>6zu5 Chain SGG (length=307) Species: 235221 (Paranosema locustae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RLNEVATFSGHKDAVMALGTCETPDAKLLFSASRDRRVLGWSLGEGAMFG
RIVKEFTKHGHSVNDVAVARSGSFVVSAGCDGLGRIIDVQSGERTLLRGH
ESDLTCAAINCQENKIVTGSVDKTLRLWNMCGELQHTFDAAIECAHEDWV
MCAEFRPLDENEVVSGSVDGTVKVWDIDARVVKSTFFDGCLGSFAVRALA
LSADGSCCAYGGSNCKTYILNLAESEAIAAFETDTPVSALAFGLTDVILA
CGTQDKIYIWDVVSNCLLAVADLSAHGKRVRCRSLVWTTSNLIAGLGNGK
ILVFEFV
Ligand information
>6zu5 Chain S60 (length=1336) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
accagguugauucugccugacgugugcgcuagucuuggggacuuagccau
gcaagccagcgaagcgcggagcggcggacggcucaguaggacggcgauaa
uccacccgcagcagagacaaggauaaccgcggcaagcugcggcuaagaca
uggacaggcugcggcgcggggaggcgcgggcagcggacagggagcggcug
cggcggaguugcuggcccaucagcugguagguaggguaagggccuaccua
ggcgacgacgggugacggggggugagagcccggaaccggagagggagccu
gagaaacagcucccacguccaaggacggcagcaggcgcggaacuugccca
aucccggcgggggaggcagccacaagacgucgcacggcaaaggagugcga
cuggagggcaagucuggugccagcagccgcgauuccagcuccaggagcgc
acaugaguguugcugcaguuaaaacguccguagucggccccgcgcuguga
ggaaaccgcggggcccaaggcggcgggcagcacgggagcgggggcgacag
gaacggacaacggccgcgggauccgggggcgagaggugaaaaucggggac
cccgcggggacgggcggaagcgaaggcggcggccggggacguguccguug
aucaaggacgaaggccggaggaucaaagaugauuagauaccgucguaguu
ccggcaguaaacgaugccgacggggcgaggccagggggcuguguccggga
gaaauuggaguguuugggcucuggggauaguacggucgcaagacagaaac
uuaaagaaauugacggaaggacaccacaaggaguggagugugcggcuuaa
uuugacucaacgcggggcagcuuaccagggccggaugcgcagggaguggu
gcauggccguuugcaacacguggggugaccugucugguugauuccgacaa
cgcgugaggccuggggugcagcaggcugugcgacgggcggcggcaagcug
caggagggcaggcgaaaacaggucagugaugcccucagaugcucugggcu
gcacgcgcacuacaauggcgcggcgagcgggagugccgggaggcgcgggc
gaggccguggcgcagcagggaugggggccuggaagggugcccugaacgag
gaauuccuaguagccgcgggucaccaagccgcggcgaaugagucccuguu
cuuuguacacaccgcccgucacuaccuaagauggaugugcaggcgaggag
gcugggcaggcacccgagccugugcaacuagauaagguauaagucguaac
aaggcugcaguaggugaaccugcggcaggaucacua
..<<<<<.[.((((>>>>>.<<<<<<<<<..<<<<<<<<......<<<.<
<<..<<<.<<...<..>...>>>>>......<<........<<<<<<<..
<<<..<<<<<<<........<.....<<<<<<....>>>>>>......>.
.......<<<<<..<<<<......>>>>.>>>>>............>>>>
>>>.>>>>>>>>>>.<<<....<<<..<<<<<<<<.......>>>>>>>>
>>>......>>>...<<<.<<<<....>>>>....>>>.>>.<<<<<<..
........>>>>>>.<<<<....>>>>...>>>>>>.........<<<..
..<<<....>>>..>>>..>>.>>>>>>...<<<<.........>>>>..
<<<<<((......<<<<.....<<..))>>....>>>>.>>>>>..>>>>
>>>>>..........<<<((.....<<<<...<<<.<<<<<<<.<<<<<.
<....<<<<.<.........>.>>>>.>..>>>>>..>>>.>>>>....<
<<<<<..<..<<<<<<<..<.<<<<.<<<...<<........>>......
>>>.>>>.>.>........<<....>>.>>>>>>>.>..>>>.>>>...>
>>...>>>>....<<<<<<<...<...<<<<.<.....>.>>>>...>>>
>>>>>..........<<<.<<.<<<<<.<<<<....>>>>.>>>>>..<<
..))>>...>>.....>>>.>>>.<<........<<<....>>>......
>>..)))).]<<<<<.<<<<<<<..<<.<<<<<<..<<<<<<<<<<....
..<<........>>..........<<<<<<<....<<..>>..<<<.<<<
..<<.<<<<<<....<<.<<<<<<....>>>...<<<......>>>...>
>>.>>....<<<<..<<<<<<<..>>>>>>>.....<<<<<.....>>>>
>.......>>>>....>>>.>>>.....>>>>>>>>....>>>>>>>...
>>.>>>>>>>>.....<.<<<<<<...<....<<<<<....>>>>>....
>..>>>>>>.>...........<<<.<<<......>>>.>>>........
..>>>>>>....<<<<<<<.........>>>>>>>......>>...>>>>
>>>>>>.>>....<..<<.<..<<<<<.<...<<.<<<<<<<<<..<<..
<<<.....>>>..>>..>>>>>>>>>.>>...>.>>>>>...>.>>...>
.....<<<.<<<<<....>>>>>.>>>.........
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6zu5 Differences in structure and hibernation mechanism highlight diversification of the microsporidian ribosome.
Resolution2.9 Å
Binding residue
(original residue number in PDB)		K17 K63 G65 H66 R90 R103 R301
Binding residue
(residue number reindexed from 1)		K12 K58 G60 H61 R85 R98 R279
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Tue Feb 18 13:43:22 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6zu5', asym_id = 'SGG', bs = 'BS01', title = 'Differences in structure and hibernation mechani...t diversification of the microsporidian ribosome.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='6zu5', asym_id='SGG', bs='BS01', title='Differences in structure and hibernation mechani...t diversification of the microsporidian ribosome.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0043022,0045182', uniprot = '', pdbid = '6zu5', asym_id = 'SGG'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0043022,0045182', uniprot='', pdbid='6zu5', asym_id='SGG')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>