Structure of PDB 6zu5 Chain SEE Binding Site BS01

Receptor Information
>6zu5 Chain SEE (length=49) Species: 235221 (Paranosema locustae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GSIARAGKVRNQTPKVEKQEKPKALTGRARKRALYERRLEANFRKMKMN
Ligand information
>6zu5 Chain S60 (length=1336) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
accagguugauucugccugacgugugcgcuagucuuggggacuuagccau
gcaagccagcgaagcgcggagcggcggacggcucaguaggacggcgauaa
uccacccgcagcagagacaaggauaaccgcggcaagcugcggcuaagaca
uggacaggcugcggcgcggggaggcgcgggcagcggacagggagcggcug
cggcggaguugcuggcccaucagcugguagguaggguaagggccuaccua
ggcgacgacgggugacggggggugagagcccggaaccggagagggagccu
gagaaacagcucccacguccaaggacggcagcaggcgcggaacuugccca
aucccggcgggggaggcagccacaagacgucgcacggcaaaggagugcga
cuggagggcaagucuggugccagcagccgcgauuccagcuccaggagcgc
acaugaguguugcugcaguuaaaacguccguagucggccccgcgcuguga
ggaaaccgcggggcccaaggcggcgggcagcacgggagcgggggcgacag
gaacggacaacggccgcgggauccgggggcgagaggugaaaaucggggac
cccgcggggacgggcggaagcgaaggcggcggccggggacguguccguug
aucaaggacgaaggccggaggaucaaagaugauuagauaccgucguaguu
ccggcaguaaacgaugccgacggggcgaggccagggggcuguguccggga
gaaauuggaguguuugggcucuggggauaguacggucgcaagacagaaac
uuaaagaaauugacggaaggacaccacaaggaguggagugugcggcuuaa
uuugacucaacgcggggcagcuuaccagggccggaugcgcagggaguggu
gcauggccguuugcaacacguggggugaccugucugguugauuccgacaa
cgcgugaggccuggggugcagcaggcugugcgacgggcggcggcaagcug
caggagggcaggcgaaaacaggucagugaugcccucagaugcucugggcu
gcacgcgcacuacaauggcgcggcgagcgggagugccgggaggcgcgggc
gaggccguggcgcagcagggaugggggccuggaagggugcccugaacgag
gaauuccuaguagccgcgggucaccaagccgcggcgaaugagucccuguu
cuuuguacacaccgcccgucacuaccuaagauggaugugcaggcgaggag
gcugggcaggcacccgagccugugcaacuagauaagguauaagucguaac
aaggcugcaguaggugaaccugcggcaggaucacua
..<<<<<.[.((((>>>>>.<<<<<<<<<..<<<<<<<<......<<<.<
<<..<<<.<<...<..>...>>>>>......<<........<<<<<<<..
<<<..<<<<<<<........<.....<<<<<<....>>>>>>......>.
.......<<<<<..<<<<......>>>>.>>>>>............>>>>
>>>.>>>>>>>>>>.<<<....<<<..<<<<<<<<.......>>>>>>>>
>>>......>>>...<<<.<<<<....>>>>....>>>.>>.<<<<<<..
........>>>>>>.<<<<....>>>>...>>>>>>.........<<<..
..<<<....>>>..>>>..>>.>>>>>>...<<<<.........>>>>..
<<<<<((......<<<<.....<<..))>>....>>>>.>>>>>..>>>>
>>>>>..........<<<((.....<<<<...<<<.<<<<<<<.<<<<<.
<....<<<<.<.........>.>>>>.>..>>>>>..>>>.>>>>....<
<<<<<..<..<<<<<<<..<.<<<<.<<<...<<........>>......
>>>.>>>.>.>........<<....>>.>>>>>>>.>..>>>.>>>...>
>>...>>>>....<<<<<<<...<...<<<<.<.....>.>>>>...>>>
>>>>>..........<<<.<<.<<<<<.<<<<....>>>>.>>>>>..<<
..))>>...>>.....>>>.>>>.<<........<<<....>>>......
>>..)))).]<<<<<.<<<<<<<..<<.<<<<<<..<<<<<<<<<<....
..<<........>>..........<<<<<<<....<<..>>..<<<.<<<
..<<.<<<<<<....<<.<<<<<<....>>>...<<<......>>>...>
>>.>>....<<<<..<<<<<<<..>>>>>>>.....<<<<<.....>>>>
>.......>>>>....>>>.>>>.....>>>>>>>>....>>>>>>>...
>>.>>>>>>>>.....<.<<<<<<...<....<<<<<....>>>>>....
>..>>>>>>.>...........<<<.<<<......>>>.>>>........
..>>>>>>....<<<<<<<.........>>>>>>>......>>...>>>>
>>>>>>.>>....<..<<.<..<<<<<.<...<<.<<<<<<<<<..<<..
<<<.....>>>..>>..>>>>>>>>>.>>...>.>>>>>...>.>>...>
.....<<<.<<<<<....>>>>>.>>>.........
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6zu5 Differences in structure and hibernation mechanism highlight diversification of the microsporidian ribosome.
Resolution2.9 Å
Binding residue
(original residue number in PDB)		R10 A11 Q17 V21 E22 T31 R35 K36 L39 R42 K55 M56 N57
Binding residue
(residue number reindexed from 1)		R5 A6 Q12 V16 E17 T26 R30 K31 L34 R37 K47 M48 N49
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Fri Nov 15 18:31:09 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6zu5', asym_id = 'SEE', bs = 'BS01', title = 'Differences in structure and hibernation mechani...t diversification of the microsporidian ribosome.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='6zu5', asym_id='SEE', bs='BS01', title='Differences in structure and hibernation mechani...t diversification of the microsporidian ribosome.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003735,0005840,0006412', uniprot = '', pdbid = '6zu5', asym_id = 'SEE'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412', uniprot='', pdbid='6zu5', asym_id='SEE')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>