Structure of PDB 6rm3 Chain SD0 Binding Site BS01

Receptor Information
>6rm3 Chain SD0 (length=210) Species: 6039 (Vairimorpha necatrix) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
NKILKKFIADGMIFAELKELFEKCLINEGFSSLELRLEESPVKVILKVVK
PHDLIGDKKWKVNQIQHLVASRLSLPDSNVVVIIDKVVEKGLCPIYQANL
IKEKMLANIPHKRAANLVLKNTKFAGATGCLVTISGKLKGLRACTKKFLE
GVVIKSGQPSRDYVKKHITTVNTKQGVIGIQVSIMLPHDPEGIIGPSTLL
PDKIVVLDAK
Ligand information
>6rm3 Chain S60 (length=1231) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
accagguugauucugccugacguagacgcuauucccuaagauuaacccau
gcauguuuuugauauggaaaaauggacugcucaguaauacucacuuuauu
uaauguauuaaaguauaacugcguuaaaguguagcauaagacuauacagu
aagagugagaccuaucagcuaguuguuaagguaauggcuuaacaaggcaa
ugacggguaacgguauuacuuuguaauauuccggagaaggagccugagag
acggcuacuaagucuaaggauugcagcaggggcgaaacuugaccuaugga
uuuuaucugaggcaguuaugggaaguaauauauuguuucauauuguaaaa
guauaugaggugauuaauuggagggcaaaucaagugccagcagccgcggu
aauacuuguuccaagaguguguaugaugauugaugcaguuaaaaaguccg
uaguuuauauuuaagaagcaauaugagguguacuguauaguugggagaga
gaugaaaugugacgacccugacuggacgaacagaagcgaaagcuguacac
uuguauguauuuuuugaacaaggacguaagcuggaggagcgaagaugauu
agauaccauuguaguuccagcaguaaacuaugccgacgaugugauaugau
auuaauuguauuagaugauagaaauuugaguuuuuuggcucuggggauag
uaugaucgcaagauugaaaauuaaagaaauugacggaagaauaccacaag
gaguggauugugcggcuuaauuugacucaacgcgagguaacuuaccaaua
uuuuauuauucagagaagauuaaucugagaaugauaauaguggugcaugg
ccguuuucaauggaugcugugaaguugauuaauuucaacaagacgugaga
cccuuuuauuaauagacagacacaaucaguguaggaaggaaaggauuaaa
acagguccguuaugcccucagacauuuugggcugcacgcgcaauacaaua
gauauauaaucuuuaugggauaauauuuuguaagagauauuugaacuugg
aauugcuaguaaauuuuauuaaauaaguagaauugaaugugucccuguuc
uuuguacacaccgcccgucgcuaucuaagaugauauguguugugaaauua
gugaaaacuacuugaacaauauguauuagaucugauaugucguaacaugg
uugcuguuggagaaccauuagcaggaucaua
..<<<<<.[.((((>>>>>.<<<<.<<<<..<<<<<.<<......<<<.<
<<..<<<.<<........>>>>>......<<........<<<<<<<..<<
...<<<<<....<<....<<<<<<....>>>>>>......>>.>>>>>..
>>>>>>>>>.<<<....<<<...<<<<<<<.......>>>>>>>.>>>..
....>>>...<<<.<<<<<...>>>>>...>>>.>>.<<.<<<.......
...>>>.>>..<<<....>>>....>>>>>>......<<.<.<....<<<
.....>>>..>.>>>>>..>>>>>..<<<..>>>....<<<<<.......
..>>>>>..........<<<<<((......<<<<.....<<..))>>...
....>>>>.>>>>>..>>>>.>>>>..........<<<((.....<<<<.
..<<<........<<<<.<<...<..<<<<<<<<<..<<<<<<<<...<.
.........>......>>>>>>>.>.>>.......<<....>>.>>>>>>
>.>..>>..>>>>..>>.>..>>>>..<.<<<<<<...<<...<<<<...
......>>>>...>>>>>>>>..>.......<<<.<<.<<.<<<<<<<<<
....>>>>>>>>>.>>......)).....>>.....>>>.>>>.<<....
...<<<<....>>>>.....>>..)))).]<<<<<.<<<<<<<..<<.<<
..<<..<<<<<<<<<<......<<........>>..........<<<<.<
<.<<<<<<<<<.....<<<<..>>>>..>>>>>>>>>.<<.<<<..<<.<
<<<<<....<<<...<<<....>>><<<......>>>......>>>....
.<<<<<<<<..>>>>....<<<<.....>>>>........>>>>.....>
>>.>>>.....>>>>>>>.....>>.>>>>...>>.>>>>>>>>.....<
<<<.....>>>>....<....<<<<<<<......>>>>>>>....>....
.>>..>>....<<<<<<<<.......>>>>>>>>......>>...>>>>>
>>>>>.>>.......<<.<..<<<<......<<<<<<<<<<<<..<<.<<
<<....>>>>.>>..>>>>>>>>>>>>......>>>>.>.>>........
..<<<<.<<<....>>>.>>>>.........
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6rm3 Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome.
Resolution3.4 Å
Binding residue
(original residue number in PDB)		K141 L145 R146 A147 K151 K159 S160 P163 Q179 V181 D206
Binding residue
(residue number reindexed from 1)		K137 L141 R142 A143 K147 K155 S156 P159 Q175 V177 D202
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Fri Nov 15 20:08:29 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6rm3', asym_id = 'SD0', bs = 'BS01', title = 'Evolutionary compaction and adaptation visualize...structure of the dormant microsporidian ribosome.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='6rm3', asym_id='SD0', bs='BS01', title='Evolutionary compaction and adaptation visualize...structure of the dormant microsporidian ribosome.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003723,0003735,0006412', uniprot = '', pdbid = '6rm3', asym_id = 'SD0'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003723,0003735,0006412', uniprot='', pdbid='6rm3', asym_id='SD0')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>