Structure of PDB 6rm3 Chain SCC Binding Site BS01

Receptor Information
>6rm3 Chain SCC (length=63) Species: 6039 (Vairimorpha necatrix) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
EANLQQQFYCKVLKTADRAGSAGALVLVRVELLNNGRKMNRLIKGSVREG
DIIALLECEREHR
Ligand information
>6rm3 Chain S60 (length=1231) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
accagguugauucugccugacguagacgcuauucccuaagauuaacccau
gcauguuuuugauauggaaaaauggacugcucaguaauacucacuuuauu
uaauguauuaaaguauaacugcguuaaaguguagcauaagacuauacagu
aagagugagaccuaucagcuaguuguuaagguaauggcuuaacaaggcaa
ugacggguaacgguauuacuuuguaauauuccggagaaggagccugagag
acggcuacuaagucuaaggauugcagcaggggcgaaacuugaccuaugga
uuuuaucugaggcaguuaugggaaguaauauauuguuucauauuguaaaa
guauaugaggugauuaauuggagggcaaaucaagugccagcagccgcggu
aauacuuguuccaagaguguguaugaugauugaugcaguuaaaaaguccg
uaguuuauauuuaagaagcaauaugagguguacuguauaguugggagaga
gaugaaaugugacgacccugacuggacgaacagaagcgaaagcuguacac
uuguauguauuuuuugaacaaggacguaagcuggaggagcgaagaugauu
agauaccauuguaguuccagcaguaaacuaugccgacgaugugauaugau
auuaauuguauuagaugauagaaauuugaguuuuuuggcucuggggauag
uaugaucgcaagauugaaaauuaaagaaauugacggaagaauaccacaag
gaguggauugugcggcuuaauuugacucaacgcgagguaacuuaccaaua
uuuuauuauucagagaagauuaaucugagaaugauaauaguggugcaugg
ccguuuucaauggaugcugugaaguugauuaauuucaacaagacgugaga
cccuuuuauuaauagacagacacaaucaguguaggaaggaaaggauuaaa
acagguccguuaugcccucagacauuuugggcugcacgcgcaauacaaua
gauauauaaucuuuaugggauaauauuuuguaagagauauuugaacuugg
aauugcuaguaaauuuuauuaaauaaguagaauugaaugugucccuguuc
uuuguacacaccgcccgucgcuaucuaagaugauauguguugugaaauua
gugaaaacuacuugaacaauauguauuagaucugauaugucguaacaugg
uugcuguuggagaaccauuagcaggaucaua
..<<<<<.[.((((>>>>>.<<<<.<<<<..<<<<<.<<......<<<.<
<<..<<<.<<........>>>>>......<<........<<<<<<<..<<
...<<<<<....<<....<<<<<<....>>>>>>......>>.>>>>>..
>>>>>>>>>.<<<....<<<...<<<<<<<.......>>>>>>>.>>>..
....>>>...<<<.<<<<<...>>>>>...>>>.>>.<<.<<<.......
...>>>.>>..<<<....>>>....>>>>>>......<<.<.<....<<<
.....>>>..>.>>>>>..>>>>>..<<<..>>>....<<<<<.......
..>>>>>..........<<<<<((......<<<<.....<<..))>>...
....>>>>.>>>>>..>>>>.>>>>..........<<<((.....<<<<.
..<<<........<<<<.<<...<..<<<<<<<<<..<<<<<<<<...<.
.........>......>>>>>>>.>.>>.......<<....>>.>>>>>>
>.>..>>..>>>>..>>.>..>>>>..<.<<<<<<...<<...<<<<...
......>>>>...>>>>>>>>..>.......<<<.<<.<<.<<<<<<<<<
....>>>>>>>>>.>>......)).....>>.....>>>.>>>.<<....
...<<<<....>>>>.....>>..)))).]<<<<<.<<<<<<<..<<.<<
..<<..<<<<<<<<<<......<<........>>..........<<<<.<
<.<<<<<<<<<.....<<<<..>>>>..>>>>>>>>>.<<.<<<..<<.<
<<<<<....<<<...<<<....>>><<<......>>>......>>>....
.<<<<<<<<..>>>>....<<<<.....>>>>........>>>>.....>
>>.>>>.....>>>>>>>.....>>.>>>>...>>.>>>>>>>>.....<
<<<.....>>>>....<....<<<<<<<......>>>>>>>....>....
.>>..>>....<<<<<<<<.......>>>>>>>>......>>...>>>>>
>>>>>.>>.......<<.<..<<<<......<<<<<<<<<<<<..<<.<<
<<....>>>>.>>..>>>>>>>>>>>>......>>>>.>.>>........
..<<<<.<<<....>>>.>>>>.........
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6rm3 Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome.
Resolution3.4 Å
Binding residue
(original residue number in PDB)		R19 S22 A23 S47
Binding residue
(residue number reindexed from 1)		R18 S21 A22 S46
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Fri Nov 15 19:57:38 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6rm3', asym_id = 'SCC', bs = 'BS01', title = 'Evolutionary compaction and adaptation visualize...structure of the dormant microsporidian ribosome.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='6rm3', asym_id='SCC', bs='BS01', title='Evolutionary compaction and adaptation visualize...structure of the dormant microsporidian ribosome.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003735,0005840,0006412', uniprot = '', pdbid = '6rm3', asym_id = 'SCC'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412', uniprot='', pdbid='6rm3', asym_id='SCC')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>