Structure of PDB 6zj3 Chain SC Binding Site BS01

Receptor Information
>6zj3 Chain SC (length=212) Species: 3039 (Euglena gracilis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GNLSKKRKFVADGVFYAELNEFLKRELAEDGYSGVEVRVTPQRTEIIIRA
TRTKEVLGEKGRRIRELTSVVQKRFNFPDNGVELYAERVANRGLSAIAQA
ESLRYKLMGGLAVRRACYGVLRFVMDNQAKGCEIIVSGKLRAQRAKSMKF
KDGYMIKSGHPAEIYVDKAVRHVYLRQGVLGIKVSIMLPFDPTGKMGPDR
PIPDQVTIINPK
Ligand information
>6zj3 Chain S1 (length=2024) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
aaucugguugauccugccagcagucauaugcuuuguucaagggcuaagcc
augcacgucucagcgcaaacggagugacaguggaucugugaauggcuccu
uacaucagcagucaucuacgugauagagugugcucgguccaccugcaagg
accccauuggacauccaccaaaaccuuguggcuaauacacguucgaccca
gucagccaugcaacacucggcaucaccggugguggcggauguaugcccag
cugauacgaagaccagcggccgcaaggccaguguugguugacucaggcug
gcccuggccgcagugcugguggauuucgugcaugcgcaugccccacuuga
ucgcaagagcuucugaccuaucagcuugacugugguguaucggaccacag
uggccuugacggguaacggagaaucaggguucgauuccggagagggagcc
ugagagacggcuaccacuaccaaggugggcagcaggcacgcaaauugccc
caugcaaagacagucugugaggcagcgacgaacaguagcaaccccgucgg
ccuugccgauggggcuuggaauggacgcuauccaaagacagccgugagua
ucaaccggagggcaagucuggugccagcagcugcgguaauuccagcuccg
agggcguauacuaacauugcugcuguuaaaacacuuguagucugccuacg
ggcugcaggucugcuggguggccgguuuguuguuucucuggccagcugug
uugggcugcaacggcugguacgucccugcgcccaccgauggugaggcucc
ugccaaaagucugccaaagcgguuuaugccucccgcacuggcaacggaca
ccaacaggggacccagcagcuggguucugguccaccaccggagcccaccg
ucugacacccuggaaaacucagugugcucaaagcauccccgcgacggcug
aauguccauccauggaaugucaaggcaucgaccaaguguggcauuggagu
ugugcuggccuuggggcccacucuggacaaccugguggugugcacccauc
gaucguaagugaugggacuguucggggugaaagauacgggagcgccagag
gugaaauucuuagaucgcugccagauccacugcagcgaaggcguucugca
agugcacguccgucgaucaagaaugagaguucggggagcaaagaugauca
gacaccgucguaguccggccacuguaaacgaugccggccaggccuuggca
gagcaagaauccuagacucugucagggccaacgagaaauccacagccugu
ggguucaggggggaguacugucgcaaggcugaaacuuaaaggaauugacg
gaauggcaccacaaggcguggaguaugcggcuuaauuugacucaacgcgg
ggaauguuaccaggucaggacgcaacugggauugacagauugagagcucu
uucuugaucuuguggacgguggugcauggccgcuccugauugguggagug
auuugucugguugauuccgauaacgagugagacaucugccucccacuagc
cugaggcucgcuagggggcugcugcaugcucccgagagccuccaguucag
cuucucugaggugcuguguccgccacaaagggcaugcaugcuagagccaa
cagcaggucugugaugcucccagauguccugggccgcacgcgcacuacau
ugucacagugaaggugucgacaugcccacgugggcccuggccugaagagg
cugggaaauccugcaagccugugacguacuggggauagaugguugcaacu
gucugccuugaacguggaaugccuaguaugccugggucaucagcccagac
cgauugugucccugccauuuguacacaccgcccgucguugcuaccgaugg
uggcuggauagagucaucaggagguuguggagggcaucccagccgaaauu
ggacgauguccagccacuagaggaagcaaaagucguaacaagguugcugu
aggugaaccugcagcaggaucauu
...<<<<<...[[[[>>>>>.<<<.<<<<<<..<<<<<..<......<<<
.<<<..<<....<.....<<.........>>....>.>>......<<..<
....<<<<.<<<..<<<..<<<<<.......((..<<<<.....))...>
>>>....<<.....<<<<.<.....>.>>>>......>>...........
<<<.<<<<<....<<<.<<.......>>>>>>>>>>.>>>..<<..<<<<
<<......[[[.(((((<<<<....>>>>................>>>>>
><<..>>.....>>....<<<<.......<<<<<..>>>>>.>>>>...>
>>>>.>>>>>>.>>>><<<....<<<..<<<<<<<<.......>>>>>>>
>>>>......>>>...<<<<<<<<....>>>>...>>>>>>>.<<.<<<.
.........>>>.>>.<<<<<..>>>>>...>>>>>>.........<<<.
...<<<.........>>>..>>>..>...>>>>>....<<<.<<<<<<<<
<...>>>>>>>.>>.>>>......<<<<............>>.>>.....
.....<<<<((....<.<<<<.....<<..))>>.......>>>>>>>>>
...>>>>>>>>>..........<<<{{.....<.<<...<<<.<.....<
<<<.<<<<<.<<.........<<<...<<<<<<..<.<..<<<<..>>.>
>.>.>..>>>>>>..>>>.>.>..>>>>>>>>>...<<<<<<<..<<<<<
.<<.....<.....>.....>.>.......<<.......>>....<<<<.
.....<<<...<<..<<.>>.>>..>>>.>>>>......>>>>>.>>>>>
>>.<<<<<<.<<<<.....<<..<<.......>>..<<.......>>...
..>>....>>>>.>>..>>>>.......<<.<<<<<<<.<<<........
...))))).]]]...>>>>>>>.>>>......<<<<<<.<<..>>>>>>>
>..>>....>....<<<.<<<.<...<<<.<<<<..<<<.<<<<...<<<
......>>>......>>>>.>>.>.>>.......<<....>>.>>.>>>.
.>.>>>..>>>...>>>...>>.>...<<<<<<<...<<...<<<<.<..
...>.>>>>...>>>>>>..>>>.........<<<.<<..<<<<<<<<<<
<<<..<......>...>>>>>>>>>>>>>...<<..}}>>....>>....
.>>>.>>>.<<<.......<<<....>>>.....>>>..]]]]..<<<<<
.<<<<<<<..<<.<<<<<<..<<<.<<<<<<......<<........>>.
.........<<<<<.<....<<<<<.....<..<<.<<<........>>>
.>>.>....>>>>>...<<.<<<..<<.<<<<<<....<<<.<<<<<...
.>>>...<<<......>>>...>>.>>>......<<<<<<<<.....<<<
<<<<<<<<<....<<<<<<<<<.>>>.>>>>>>..>>>>>>.>>>....>
>>.....>>>>>...<<<<<<........>>>>>>.......>>>.....
.>>>.>>>.....>>>>>>>.....>.>>>>>...>>.>>>>.>>>....
.<<<<<<<.......<.......<<<<<..>>>>><<<<<<<<....>>>
>>>>>....>........>>>>>>>...........<<.<<<........
..>>>.>>..........>>>>>>.....<.<<<<<.......>>>>>.>
.......>>...>>>>>>>>>>.>>....<..<<.<.<<<<<.<<...<<
<<<<<<<<<<..<<<.......<<<<<.<<<.....>>>>>>>>......
.>>>..>>>>>>>>>>>>...>>.>>>>>..>.>>...>.....<<<<<<
<<<<..>>>>>>>>>>........
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6zj3 Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis.
Resolution3.15 Å
Binding residue
(original residue number in PDB)		N6 L7 S8 K9 K10 R11 A15 R29 S141 K143 R145 Q147 R148 A149 Y158 M159 I160 K161 S162 H164 P165 V174 H176 Y178 R180 Q181 V183 G185 K187 P207 D208
Binding residue
(residue number reindexed from 1)		N2 L3 S4 K5 K6 R7 A11 R25 S137 K139 R141 Q143 R144 A145 Y154 M155 I156 K157 S158 H160 P161 V170 H172 Y174 R176 Q177 V179 G181 K183 P203 D204
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sun Apr 6 22:33:00 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6zj3', asym_id = 'SC', bs = 'BS01', title = 'Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='6zj3', asym_id='SC', bs='BS01', title='Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003723,0003735,0006412,0015935', uniprot = '', pdbid = '6zj3', asym_id = 'SC'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003723,0003735,0006412,0015935', uniprot='', pdbid='6zj3', asym_id='SC')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>