Structure of PDB 4v3p Chain SB Binding Site BS01

Receptor Information
>4v3p Chain SB (length=208) Species: 4565 (Triticum aestivum) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VSDGVFYAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGE
KGRRIRELTSVVQKRFNFLENGVELYAEKVVNRGLCAIAQAESLRYKLLG
GLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSG
QPVNEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIH
PPKEENEL
Ligand information
>4v3p Chain S1 (length=1743) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uaccugguugauccugccaguagucauaugcuugucucaaaguuaagcca
ugcaugugcaaguaugaaccaauuugaacugugaaacugcgaauggcuca
uuaaaucaguuauaguuuguuugauggacucggauaaccguaguaauucu
agagcuaauacgugcaacaaaccccgacuucugggaggggcgcauuuauu
agauaaaaggcugacgcgggcucugcucgcugauccgaugauucaugaua
acucgacggaucgcacggccuucgugccggcgacgcaucauucaaauuuc
ugcccuaucaacuuuaugguaggauaggggccuaccaugguggugacggg
ugacggagaauuaggguucgauuccggagagggagccugagaaacggcua
ccacauccaaggaaggcagcaggcgcgcaaauuacccaauccugacacgg
ggagguagugacaauaaauaacaauaccgggcgcauuagugucugguaau
uggaaugaguacaaucuaaaucccuuaacgaggauccauuggagggcaag
ucuggugccagcagccgcgguaauuccagcuccaauagcguauauuuaag
uuguugcaguuaaaaagcucguaguuggaccuugggccgggucggccggu
ccgccucacggcgagcaccgaccuacucgaccccggcaucgcgcuccuag
ccuuaauuggccgggucguguuuccgguuagagugcucaaagcaagccau
cgcucuggauacauuagauuccgguccuauuguguuggccuucgggaucg
gaguaaugggacagucgggggcauucguauuucauagucagaggugaaau
ucuuggauuuaugaaagacgaacaacugcgaaagcauuugccaaggaugu
uuucauuaaucaagaacgaaaguugggggcucgaagacgaucagauaccg
uccuagucucaaccauaaacgaugccgaccagggaucggcggauguugcu
uauaggacuccgccggcaccuuagagaaaucaaagucuuuggguuccggg
gggaguauggucgcaaggcugaaacuuaaaggaauugacggaagggcacc
accaggcguggagccugcgcuuaauuugacucaacacggggaaacuuacc
agguccagacauagcaaggauugacagacugagagcucuuucuugauucu
augggugguggugcauggccguucuuaguugguggagcgauuugucuggu
uaauuccguuaacgaacgagaccucagccugcuaacuagcuaugcggagc
caucccuccgcagcuagcuucuuagagggacuauggccguuuaggccacg
gaaguugaggcaauaacaggucugucaugcccuuaauguucugggcgcac
gcgcgcuacacugauguauucaacgaguauauagccuuggccgacaggcc
cggguaaucuugggaaauuucaucgugauggggauagaucauugcaauug
uuggucuucaacgaggaaugccuaguaagcgcgagucaucagcucgcguu
gacuacgucccugcccuuuguacacaccgcccgucgcuccuaccgauuga
augguccggugaaguguucggaucgcggcgacgggggcgguucgccgccc
ccgacgucgcgagaaguccauugaaccuuaucauuuagaggaagcagaag
ucguaacaagguuuccguaggugaaccugcggaaggaucauug
...<<<<<.{.[[[[>>>>>.<<<..<<<<<...<...........<<<.
<<<...<...<<.....<<.<.......(>>>....>>>.......<<..
......<<<..<<..........<<<....<<)....<..<<<.....>>
>..>......>>.........<<<<..<<...>>..>>>>.....<<<<<
<.....((((((((.<<<<<<...>>>>>>...............>>>>>
>.....<...<<<<.<<.<......>.>>>>>>.>>>>.......>>..>
>>.<<<....<<<...<<<<<<.........>>>>>>.>>>......>>>
...<<<<<<<<....>>>>...>>>>.>>.<<.<<<..........>>>.
>>.<.<<....>>.>...>>>>>>.........<<<...<<<<<...>>>
>.>>>>.........>.....<<<<<<<<<<<<<....>>>>>>>>>>.>
>>.......<.................>..........<<<<<((.....
.<<<<.....<<..))>>.......>>>>.>>>>>..>>>>>.>>>....
......<.<[[.....<.<<...<<<.........<..<<..........
.........................>>.....><<<.<.<<<<..<<<.<
<<......>>>.>>>.>>>>.>.>>>.<<<<.<<<.<<<.<<<.<....>
.>>>.>>>.>>>.>>>>.<<<<<<<<<<......)))))))).>>>>>>>
>>>....<<<<<<.<<...<<<<..<<..<<<<<<<<...<<<......>
>>......>>>>>>>.>.>>......<<<....>>>..>>>>..>>.>>>
.>>>...>>>...>>.>....<<<<<<<...<...<<<<.........>>
>>...>>>>>>>>..........<<<.<<.<<<..<<<<<<<<.<<<...
.....>>>>>>>>>>>..>>>..<<..]]>>...>>.....>>>.>.>.<
<<......<<<<....>>>>....>>>..]]]].}<<<<<.<<<<<<<..
<<.<<<<<<..<<<.<<<<<......<<........>>..........<<
<<<........<....<<....<<............>>........>>..
..>......<<<..<<.<<<<<.....<<<.<<<<<....>>>...<<<.
.....>>>...>>.>>>......<<<...<.<<<<..<<<<<<<<<<<<.
.....>>>>>>>..>>>>>..>>>>.>........<<.......>>....
.....>>>.......>>.>>>.....>>>>>........>>>>>..>..>
>>>.>>>.....<<<<.<<..................<<<<......>>>
.>..............>.>.>>>>.........<.<<<<<<.........
.>>>>>>>.........>>>>>>....<<<<<<<<<.....>>>>>>>>>
......>>...>>>>>>>>>>.>>.......<<.<.<<..<.<<...<<<
<<<<<..<<<..<<<<......<<<<<<<<.<<<<<<<<<....>>>>>>
>>>.>>>>>>>>......>>>>..>>>..>>>>>>>>..>>.>..>>..>
.>>.........<<<<<<<<<....>>>>>>>>>.........
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB4v3p The molecular structure of the left-handed supra-molecular helix of eukaryotic polyribosomes.
Resolution34.0 Å
Binding residue
(original residue number in PDB)		S139 K141 R143 R146 A147 K151 Y156 M157 I158 G161 Q162 Q179 K185
Binding residue
(residue number reindexed from 1)		S128 K130 R132 R135 A136 K140 Y145 M146 I147 G150 Q151 Q168 K174
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:0022626 cytosolic ribosome
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:4v3p, PDBe:4v3p, PDBj:4v3p
PDBsum4v3p
PubMed25376914
UniProtQ8L804

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