Structure of PDB 8bn3 Chain S5 Binding Site BS01

Receptor Information
>8bn3 Chain S5 (length=206) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
FTPVVLATPIPEEVQQAQTEIKLFNKWSFEEVEVKDASLVDYVQVRQPIF
VAHTAGRYANKRFRKAQCPIIERLTNSLMMNGRNNGKKLKAVRIIKHTLD
IINVLTDQNPIQVVVDAITNTGPREDTTRVGGGGAARRQAVDVSPLRRVN
QAIALLTIGAREAAFRNIKTIAETLAEELINAAKGSSTSYAIKKKDELER
VAKSNR
Ligand information
>8bn3 Chain 2 (length=1737) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uaucugguugauccugccaguagucauaugcuugucucaaagauuaagcc
augcaugucuaaguauaagcaauuuauacagugaaacugcgaauggcuca
uuaaaucaguuaucguuuauuugauaguuccuuuacuacaugguauaacu
gugguaauucuagagcuaauacaugcuuaaaaucucgacccuuuggaaga
gauguauuuauuagauaaaaaaucaaugucuucggacucuuugaugauuc
auaauaacuuuucgaaucgcauggccuugugcuggcgaugguucauucaa
auuucugcccuaucaacuuucgaugguaggauaguggccuaccaugguuu
caacggguaacggggaauaaggguucgauuccggagagggagccugagaa
acggcuaccacauccaaggaaggcagcaggcgcgcaaauuacccaauccu
aauucagggagguagugacaauaaauaacgauacagggcccauucggguc
uuguaauuggaaugaguacaauguaaauaccuuaacgaggaacaauugga
gggcaagucuggugccagcagccgcgguaauuccagcuccaauagcguau
auuaaaguuguugcaguuaaaaagcucguaguugaacuuugggcccgguu
ggccggucggauuuccaacggggccuuuccuucuggcuaaccuugagucc
uuguggcucuuggcgaaccaggacuuuuacuuugaaaaaauuagaguguu
caaagcaggcguauugcucgaauauauuagcauggaauaauagaauagga
cguuugguucuauuuuguugguuucuaggaccaucguaaugauuaauagg
gacggucgggggcaucaguauucaauugucagaggugaaauucuuggauu
uauugaagacuaacuacugcgaaagcauuugccaaggacguuuucauuaa
ucaagaacgaaaguuaggggaucgaagaugaucagauaccgucguagucu
uaaccauaaacuaugccgacuagggaucgggugcuugcacucggcaccuu
acgagaaaucaaagucuuuggguucuggggggaguauggucgcaaggcug
aaacuuaaaggaauugacggaagggcaccaccaggaguggagccugcggc
uuaauuugacucaacacggggaaacucaccagguccagacacaauaagga
uugacagauugagagcucuuucuugauuuugugggugguggugcauggcc
guucuuaguugguggagugauuugucugcuuaauugcgauaacgaacgag
accuuaaccuacuaaauaguggugcuagcauuugcugguuauccacuucu
uagagggacuaucgguuucaagccgauggaaguuugaggcaauaacaggu
cugugaugcccuuagacguucugggccgcacgcgcgcuacacugacggag
ccagcgagucuaaccuuggccgagaggucuugguaaucuugugaaacucc
gucgugcuggggauagagcauuguaauuauugcucuucaacgaggaauuc
cuaguaagcgcaagucaucagcuugcguugauuacgucccugcccuuugu
acacaccgcccgucgcuaguaccgauugaauggcuuagugaggccucagg
aucugggagaauuuggacaaacuuggucauuuagaggaacuaaaagucgu
aacaagguuuccguaggugaaccugcggaaggaucau
...<<<<<.{.((((>>>>><<<<.<<<<<<...<.<...<......<<<
.<<<..<<....<<....<<..........>>...>>.>>......<<..
......<<<..<<..<<....<<<..................<.....<<
.<<.......>>.>>......>.........<<<<<..<......>..>>
>>><...<<<<<<......((....{........................
.>>>>>>.....>...<<<<..<<<.....>>>.>>>>....>>>...>>
>>..>>>.<<<....<<<....<<<<<<<<.......>>>>>>>>>>>..
....>>>...<<<.<<<<....>>>>....>>>.>>.<<.<<<.......
...>>>.>>.<.<<....>>.>...>>>>>>.........<<<....<<<
.....>>>..>>>..>....>.>.....<<<..<<<<..<......>..>
>>>...>>>......<<..<...........>..>>.........<<<<<
((....<.<<<<.....<<..))>>.......>>>>>>>>>>..>>>>>>
>>>>.........<<<[[.....<.<<...<<<.<<....<<<<<<.<<<
<<............>>>>>.>>>>>>....<<<<<.....<.........
............>.....>>>>>...<<<<<.<<.......<<...<...
....>..<<<.....>>>....>>......>>.>>..>>>.........<
<<..<<<<<<<<.....}....)).>>>>>>>>.>>>.....>>....<<
<<<<.<<...<<<<..<<..<<<<<<.<...<<<......>>>......>
.>>>>>.>.>>.......<<....>>...>>>>...>>>>>.>>>...>>
>...>>.>....<<<<<<<...<...<<<<.<.....>.>>>>...>>>>
>>>>..........<<<.<<.<<<..<<<<<<<....>>>>>>>..>>>.
..<<..]]>>...>>.....>>>.>>>.<<<......<<<<....>>>>.
...>>>..)))).}<<<<<.<<<<<<<..<<.<<<<<<..<<<.<<<<<.
......<<........>>..........<<<<<.<....<<<<<......
..<<.<<<........>>>.>>......>>>>>...<<.<<<..<<.<<<
<<<....<<<.<<<<<....>>>...<<<......>>>...>>.>>>...
.<<<<<.<<..<<<<..<<<<<.<<<<<<....>>>>>>...>>>>>..>
>>>.>>....<<<<<<.....>>>>>>.......>>>>>....>>>.>>>
.....>>>>>>>.....>.>>>>>....>.>>>>.>>>.....<<<<<<<
......<<.....<<..<<<<....>>>>..>>....>>.......>>>>
>>>...........<<<<<<..........>>>>>>..........>>>>
>>....<<<<<<<<.......>>>>>>>>......>>...>>>>>>>>>>
.>>....<..<<.<..<<<<.<<....<<<<<<<<.<<<..<.<<..<..
.<<...>>...>..>>.>..>>>.>>>>>>>>...>>.>>>>...>.>>.
..>.....<<<<<<<<<....>>>>>>>>>.......
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8bn3 Evolving precision: rRNA Expansion Segment 7S enhances translation accuracy in eukaryal ribosomes
Resolution2.4 Å
Binding residue
(original residue number in PDB)		H72 A78 N79 K80 R81 K84 N95 M98 N100 R102 N103 N104 G105 K106 K107 K109 R112 N169 R180 R185 N186 I187 T189 I190
Binding residue
(residue number reindexed from 1)		H53 A59 N60 K61 R62 K65 N76 M79 N81 R83 N84 N85 G86 K87 K88 K90 R93 N150 R161 R166 N167 I168 T170 I171
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003729 mRNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0000028 ribosomal small subunit assembly
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8bn3, PDBe:8bn3, PDBj:8bn3
PDBsum8bn3
PubMed38324474
UniProtA0A1L4AA68

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