Structure of PDB 8q4f Chain S Binding Site BS01

Receptor Information
>8q4f Chain S (length=84) Species: 562 (Escherichia coli) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAV
HNGRQHVPVFVTDEMVGHKLGEFAPTRTYRGHAA
Ligand information
>8q4f Chain A (length=1512) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
aauugaagaguuugaucauggcucagauugaacgcuggcggcaggccuaa
cacaugcaagucgaacgguaacaggaagaagcuugcuucuuugcugacga
guggcggacgggugaguaaugucugggaaacugccugauggagggggaua
acuacuggaaacgguagcuaauaccgcauaacgucgcaagaccaaagagg
gggccucuugccaucggaugugcccagaugggauuagcuaguaggugggg
uaacggcucaccuaggcgacgaucccuagcuggucugagaggaugaccag
ccacacuggaacugagacacgguccagacuccuacgggaggcagcagugg
ggaauauugcacaaugggcgcaagccugaugcagccaugccgcguguaug
aagaaggccuucggguuguaaaguacuucagcggggaggaagggaguaaa
guuaauaccuuugcucauugacguuacccgcagaagaagcaccggcuaac
uccggccagcagcccgguaauacggagggugcaagcguuaaucggaauua
cugggcguaaagcgcacgcaggcgguuuguuaagucagaugugaaauccc
cgggcucaaccugggaacugcaucugauacuggcaagcuugagucucgua
gagggggguagaauuccagguguagcggugaaaugcguagagaucuggag
gaauaccgguggcgaaggcggcccccuggacgaagacugacgcucaggug
cgaaagcguggggagcaaacaggauuagauacccugguaguccacgccgu
aaacgaugucgacuuggagguugugccggcguggcuuccggagcuaacgc
guuaagucgaccgccuggggaguacggccgcaagguuaaaacucaaauga
auugacgggggcccgcacaagcgguggagcaugugguuuaauucgauaac
gcgaagaaccuuaccuggucuugacauccacggaaguuuucagagaugag
aaugugccuucgggaaccgugagacaggugcugcauggcugucgucagcu
cguguugugaaauguuggguuaagucccgcaacgagcgcaacccuuaucc
uuuguugccagcgguccggccgggaacucaaaggagacugccagugauaa
acuggaggaagguggggaugacgucaagucaucaugcccuuacgaccagg
gcacacacgugcuacaauggcgcauacaaagagaagcgaccucgcgagag
caagcggaccucauaaagugcgucguaguccggauuggagucugcaacuc
gacuccaugaagucggaaucgcuaguaaucguggaucagaaugccacggu
gaauacguucccgggccuuguacacaccgcccgucacaccaugggagugg
guugcaaaagaaguagguagcuuaaccuucgggagggcgcuuaccacuuu
gugauucaugacuggggugaagucguaacaagguaaccguaggggaaccu
gcgguuggauca
.......<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<.....
<<<.<<<..<<<..<<.<...<<<<<<............>>>.>>>.>..
>>>>>......<<.......<<<<<<<..<<...<<<<<<<.<.<<....
.<<<<<......>>>>>......>>.>.....<<<....>>.>...<<<<
<<.>>>>>>.>>>>>>>..>>.>>>>>>><<<....<<<..<<<<<<<..
.......>>>>>>>>>>......>>>..<<<<<<<<....>>>>...>>>
>.>>.<<<<.<<.........>>>>>>.<<<<....>>>>...>>>>>>.
........<<<....<<<<....>>>>..>>>..>>.>>>>>>..<<<<.
......<<.<...>>>......>>>>..<.<<..<......<.<<<<<<<
.........>>>>>>>.>........>..>>....>..<<<<<(((...<
<<<<.......)))........>>>>>>>>>>..>>>>>>>>>.......
...<<<((.....<<<<...<<<.<<<<<<<.<<<<<<<<<<......<<
<<<<.....>>>>>>....>>>>>>>>..>>>>>>>>>...<<<<<<<<.
..<<<<<<<....<<<<<<<<...<<<......>>>......>>>>>>>.
>..........<<....>>.>>>>>>>..>>>>.>>>>...>>>...>>>
>....<<<<<<...<<...<<<<.<.....>.>>>>...>>>>>>>>...
.......<<<<<<.<<<<<<<<<<......>>>>>>>>>>..<<..))>>
.....>>>>>>.>>>.<<<......<<<<....>>>>....>>>..))))
.]<<<<<.<<<<<<<.<<.<<<<<<..<<<<<<<<<<......<<.....
.>>..........<<<<<<<......<<.<<<<.....<<<......>>>
......<<....>>..>>>>..>>..<.......<<<<<<.......<<<
<<<<<<....>>>..<<<<......>>>>..>>>>>>.....<<<<.<<<
<<<<...<...<<.......>>.>....>>>>>>>.....<<<<<.....
>>>>>........>>>>.........>>>...>>>....>...>>>>>>>
..>>.>>>>>>>>.....<<<<.........<<..<<...<<<....>>>
...>>....>>.........>>>>......<....<<<<<<<........
>>>>>>>....>.....>>>>>>.....<<<<<<.........>>>>>>.
......>>...>>>>>>>>>>.>>....<..<<.<.<<<<.<<<..<<<<
<<<<<<<<....<<<<<<.<<<<..<<....>>.>>>>>>>>>>...>>>
>>>>>>>>>..>>>.>>>>..>.>>...>.....<<<<<<<<<....>>>
>>>>>>......
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8q4f Structure of arbekacin bound Escherichia coli 70S ribosome
Resolution3.1 Å
Binding residue
(original residue number in PDB)
R3 S4 L5 K6 K7 H14 W34 R36 R37 H52 G54 R55 K70 T77 R78 Y80 H83
Binding residue
(residue number reindexed from 1)
R2 S3 L4 K5 K6 H13 W33 R35 R36 H51 G53 R54 K69 T76 R77 Y79 H82
External links
PDB RCSB:8q4f, PDBe:8q4f, PDBj:8q4f
PDBsum8q4f
PubMed
UniProtP0A7U3|RS19_ECOLI Small ribosomal subunit protein uS19 (Gene Name=rpsS)

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