Structure of PDB 8kd3 Chain S Binding Site BS01

Receptor Information
>8kd3 Chain S (length=103) Species: 8355 (Xenopus laevis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RQSTGKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKT
DLRFQSSAVMALQEASEAYLVALFEDTNLAAIHAKRVTIMPKDIQLARRI
RGE
Ligand information
>8kd3 Chain X (length=164) [Search DNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ggcggccgctctagaacaggatgtatatatctgacacgtgcctggagact
agggagtaatccccttggcggttaaaacgcgggggacagcgcgtacgtgc
gtttaagcggtgctagagctgtctacgaccaattgagcggcctcggcacc
gggattctccaggg
Receptor-Ligand Complex Structure
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PDB8kd3 Structural basis of nucleosome deacetylation and DNA linker tightening by Rpd3S histone deacetylase complex.
Resolution2.9 Å
Binding residue
(original residue number in PDB)		R40 Y41 R72 R83 F84 Q85 R116 V117 T118
Binding residue
(residue number reindexed from 1)		R10 Y11 R42 R53 F54 Q55 R86 V87 T88
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0030527 structural constituent of chromatin
GO:0046982 protein heterodimerization activity
Cellular Component
GO:0000786 nucleosome
GO:0005634 nucleus

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Molecular Function
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Cellular Component
External links
PDB RCSB:8kd3, PDBe:8kd3, PDBj:8kd3
PDBsum8kd3
PubMed37666978
UniProtA0A310TTQ1

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