Structure of PDB 8fmw Chain S Binding Site BS01

Receptor Information
>8fmw Chain S (length=84) Species: 224326 (Borreliella burgdorferi B31) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ARSIKKGPFIEKSLYQKVLSSFGSEKRVVIKTYSRSSTIIPEMVSLTISV
YNGKTFIPIYITEDLVGHKLGEFSPTRIFRGHAK
Ligand information
>8fmw Chain A (length=1529) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
aaauaacgaagaguuugauccuggcuuagaacuaacgcuggcagugcguc
uuaagcaugcaagucaaacgggauguagcaauacauucaguggcgaacgg
gugaguaacgcguggaugaucuaccuaugagauggggauaacuauuagaa
auaguagcuaauaccgaauaaggucaguuaauuuguuaauugaugaaagg
aagccuuuaaagcuucgcuuguagaugagucugcgucuuauuagcuaguu
gguaggguaaaugccuaccaaggcaaugauaaguaaccggccugagaggg
ugaacggucacacuggaacugagauacgguccagacuccuacgggaggca
gcagcuaagaaucuuccgcaaugggcgaaagccugacggagcgacacugc
gugaaugaagaaggucgaaagauuguaaaauucuuuuauaaaugaggaau
aagcuuuguaggaaaugacaaagugaugacguuaauuuaugaauaagccc
cggcuaauuacgugccagcagccgcgguaauacguaaggggcgagcguug
uucgggauuauugggcguaaagggugaguaggcggauauauaagucuaug
cauaaaauaccacagcucaacuguggaccuauguuggaaacuauaugucu
agagucugauagaggaaguuagaauuucugguguaaggguggaaucuguu
gauaucagaaagaauaccggaggcgaaggcgaacuucugggucaagacug
acgcugagucacgaaagcguagggagcaaacaggauuagauacccuggua
gucuacgcuguaaacgaugcacacuugguguuaacuaaaaguuaguaccg
aagcuaacguguuaagugugccgccuggggaguaugcucgcaagagugaa
acucaaaggaauugacgggggcccgcacaagcgguggagcaugugguuua
auucgaugauacgcgaggaaccuuaccagggcuugacauauauaggauau
aguuagagauaauuauuccccguuuggggucuauauacaggugcugcaug
guugucgucagcucgugcugugagguguuggguuaagucccgcaacgagc
gcaacccuuguuaucuguuaccagcauguaaugguggggacucagauaag
acugccggugauaagucggaggaaggugaggaugacgucaaaucaucaug
gcccuuauguccugggcuacacacgugcuacaauggccuguacaaagcga
agcgaaacagugaugugaagcaaaacgcauaaagcaggucucaguccgga
uugaagucugaaacucgacuucaugaaguuggaaucgcuaguaaucguau
aucagaaugauacggugaauacguucucgggccuuguacacaccgcccgu
cacaccacccgaguugaggauacccgaagcuauuauucuaacccguaagg
gaggaagguauuuaagguauguuuagugaggggggugaagucguaacaag
guagccguacuggaaagugcggcuggauc
..........<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<..
...<<<.<<<..<<<..<<.<<<<<<<....>>>>>>>.>>>>>......
<<.......<<<<<<<<..<<...<<<<<<<.<.<<.....<<<<<<...
.>>>>>>......>>.>.....<<<<<<<<<....>>>>>>>>>....<<
<............>>>.>>>>>>>..>>>>>>>>>><<<....<<<..<<
<<<<<<.......>>>>>>>>>>>......>>>..<<<<<<<<....>>>
>...>>>>.>>.<<<<<.<.........>>>>>>.<<<<....>>>>...
>>>>>>.........<<<....<<<<....>>>>..>>>..>>.>>>>>>
..<<<<......<<<<....>>>>.....>>>>...<<<<<<<.......
..<<<<<<<........>>>>>>>..........>>>>>>>.....<<<<
<(((...<<<<<.....<<.)))>>.......>>>>>>>>>>..>>>>>>
>>>..........<<<((.....<<<<...<<<.<<<<<<<.<<<<<..<
<<<<.....<<<<<<.....>>>>>>...>>>>>.>>>..>>>>>>>>>.
..<<<<<<<<...<<<<<<<....<<<<<<<<<..<<<......>>>...
..>>>>>>>>.>..........<<....>>.>>>>>>>..>>>>.>>>>.
..>>>...>>>>...<<<<<<<...<<...<<<<.<.....>.>>>>...
>>>>>>>>>.........<<<<<<.<<<<<<<<<<.....>>>>>>>>>>
..<<..))>>.....>>>>>>.>>>.<<<......<<<<....>>>>...
.>>>..)))).]<<<<<.<<<<<<<.<<.<<<<<<..<<<<<<<<<<...
...<<........>>..........<<<<<<<......<<<<<.......
<<<<<....>>>>>....<<<.....>>>...>>>>>.<<<.<<<..<<<
<<<.......<<<<<<<<<....>>>..<<<<......>>>>..>>>>>>
.....<<<<.<<<<<<<...<<..<<<......>>>>>....>>>>>>>.
....<<<<<.....>>>>>........>>>>.........>>>...>>>>
>>>>>...>>>>>>>...>>.>>>>>>>>.....<<<<<<<.....<<<.
.<<...<<<....>>>...>>....>>>.....>>>>>>>......<...
.<<<<<<<........>>>>>>>....>.....>>>>>>....<<<<<<<
.........>>>>>>>......>>...>>>>>>>>>>.>>....<..<<.
<.<<<<.<<<..<<<<<<.<<<<<...<<.<<<..<<<<..<<.....>>
.>.>>>.>>>.>>..>>>>>.>>>>>>..>>>.>>>>..>.>>...>...
..<<<<<<<<<....>>>>>>>>>.....
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8fmw The structure of a hibernating ribosome in a Lyme disease pathogen.
Resolution2.86 Å
Binding residue
(original residue number in PDB)		A2 R3 S4 I5 K7 F10 K18 Y34 R36 S37 Y52 G54 K55 K70 G72 E73 T77 R78 F80 R81 A84 K85
Binding residue
(residue number reindexed from 1)		A1 R2 S3 I4 K6 F9 K17 Y33 R35 S36 Y51 G53 K54 K69 G71 E72 T76 R77 F79 R80 A83 K84
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0000028 ribosomal small subunit assembly
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8fmw, PDBe:8fmw, PDBj:8fmw
PDBsum8fmw
PubMed37907464
UniProtP94271|RS19_BORBU Small ribosomal subunit protein uS19 (Gene Name=rpsS)

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