Structure of PDB 8ewv Chain S Binding Site BS01

Receptor Information
>8ewv Chain S (length=146) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PVLRSVNSREPSQVIFCNRSPRVVLPVWLNFDGEPQPYPTLPPGTGRRIH
SYRGHLWLFRDAGTHDGLLVNQTELFVPSLNVDGQPIFANITLPVYTLKE
RCLQVVRSLVKPENYRRLDIVRSLYEDLEDHPNVQKDLERLTQERI
Ligand information
Ligand IDX5K
InChIInChI=1S/C48H69N13O5S/c1-29-37(31(3)59(9)56-29)27-58(8)46-53-45(57(7)21-20-40(64)51-35-15-16-35)54-47(55-46)60-22-18-32(19-23-60)12-17-39(63)52-42(48(4,5)6)44(66)61-26-36(62)24-38(61)43(65)49-25-33-10-13-34(14-11-33)41-30(2)50-28-67-41/h10-11,13-14,28,32,35-36,38,42,62H,12,15-27H2,1-9H3,(H,49,65)(H,51,64)(H,52,63)/t36-,38+,42-/m1/s1
InChIKeyNCTRMGWBUJFIPQ-ZJMRITFWSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7Cc1c(c(n(n1)C)C)CN(C)c2nc(nc(n2)N(C)CCC(=O)NC3CC3)N4CCC(CC4)CCC(=O)N[C@H](C(=O)N5C[C@@H](C[C@H]5C(=O)NCc6ccc(cc6)c7c(ncs7)C)O)C(C)(C)C
OpenEye OEToolkits 2.0.7Cc1c(c(n(n1)C)C)CN(C)c2nc(nc(n2)N(C)CCC(=O)NC3CC3)N4CCC(CC4)CCC(=O)NC(C(=O)N5CC(CC5C(=O)NCc6ccc(cc6)c7c(ncs7)C)O)C(C)(C)C
CACTVS 3.385CN(CCC(=O)NC1CC1)c2nc(nc(n2)N3CCC(CC3)CCC(=O)N[C@H](C(=O)N4C[C@H](O)C[C@H]4C(=O)NCc5ccc(cc5)c6scnc6C)C(C)(C)C)N(C)Cc7c(C)nn(C)c7C
CACTVS 3.385CN(CCC(=O)NC1CC1)c2nc(nc(n2)N3CCC(CC3)CCC(=O)N[CH](C(=O)N4C[CH](O)C[CH]4C(=O)NCc5ccc(cc5)c6scnc6C)C(C)(C)C)N(C)Cc7c(C)nn(C)c7C
ACDLabs 12.01Cc1n(C)nc(C)c1CN(C)c1nc(nc(n1)N(C)CCC(=O)NC1CC1)N1CCC(CC1)CCC(=O)NC(C(=O)N1CC(O)CC1C(=O)NCc1ccc(cc1)c1scnc1C)C(C)(C)C
FormulaC48 H69 N13 O5 S
NameN-{3-[1-(4-{[3-(cyclopropylamino)-3-oxopropyl](methyl)amino}-6-{methyl[(1,3,5-trimethyl-1H-pyrazol-4-yl)methyl]amino}-1,3,5-triazin-2-yl)piperidin-4-yl]propanoyl}-3-methyl-L-valyl-(4R)-4-hydroxy-N-{[4-(4-methyl-1,3-thiazol-5-yl)phenyl]methyl}-L-prolinamide
ChEMBL
DrugBank
ZINC
PDB chain8ewv Chain S Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8ewv DNA-encoded library (DEL)-enabled discovery of proximity inducing small molecules
Resolution3.4 Å
Binding residue
(original residue number in PDB)
R69 W88 Y98 P99 R107 I109 S111 Y112 H115
Binding residue
(residue number reindexed from 1)
R9 W28 Y38 P39 R47 I49 S51 Y52 H55
Annotation score1
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:8ewv, PDBe:8ewv, PDBj:8ewv
PDBsum8ewv
PubMed37919549
UniProtP40337|VHL_HUMAN von Hippel-Lindau disease tumor suppressor (Gene Name=VHL)

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