Structure of PDB 6gej Chain S Binding Site BS01

Receptor Information

>6gej Chain S (length=208) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

MKALVEEIDKKTYNPDIYFTSLSRPVKRINYSLADLEARLYTRYTQQEIL
QSDRRFMELNTENFSDLPNVPTLLSDLTGVPRDRIESTTKPIWVLKPETL
REIQLSYKSTKLPKPKRKNTNRIVALKKVLSSKRNLHSFLDSALLNLMDK
NVIYHNVYNKRYFKVLPLITTCSICGGYDSISSCVNCGNKICSVSCFKLH
NETRCRNR

Ligand information

Ligand ID

InChI

InChI=1S/Zn/q+2

InChIKey

PTFCDOFLOPIGGS-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.341	[Zn++]
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Zn+2]

Formula

Name

ZINC ION

PDB chain

6gej Chain S Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	6gej Structure and dynamics of the yeast SWR1-nucleosome complex.
Resolution	3.6 Å
Binding residue (original residue number in PDB)	C244 C247 C268
Binding residue (residue number reindexed from 1)	C172 C175 C196
Annotation score	4

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0005515	protein binding
GO:0008270	zinc ion binding
GO:0031491	nucleosome binding
GO:0046872	metal ion binding

	Biological Process
GO:0006325	chromatin organization
GO:0006338	chromatin remodeling
GO:0006355	regulation of DNA-templated transcription
GO:0006623	protein targeting to vacuole

	Cellular Component
GO:0000785	chromatin
GO:0000812	Swr1 complex
GO:0005634	nucleus

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Molecular Function

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Cellular Component

External links

PDB	RCSB:6gej, PDBe:6gej, PDBj:6gej
PDBsum	6gej
PubMed	30309918
UniProt	Q03433\|VPS71_YEAST Vacuolar protein sorting-associated protein 71 (Gene Name=VPS71)

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