Structure of PDB 5nwy Chain S Binding Site BS01

Receptor Information

>5nwy Chain S (length=177) Species: 83333 (Escherichia coli K-12) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

AKLHDYYKDEVVKKLMTEFNYNSVMQVPRVEKITLNMGVGEAIADKKLLD
NAAADLAAISGQKPLITKARKSVAGFKIRQGYPIGCKVTLRGERMWEFFE
RLITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRG
LDITITTTAKSDEEGRALLAAFDFPFR

Ligand information

>5nwy Chain M (length=75) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

ugggguaucgccaagcgguaaggcaccggauucugauuccggcauuccga
gguucgaauccucguaccccagcca

<<<<<<<..<<<.........>>>.<<<<<.......>>>>>.....<<<
<<.......>>>>>>>>>>>>....

Receptor-Ligand Complex Structure

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Structure summary

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PDB	5nwy The force-sensing peptide VemP employs extreme compaction and secondary structure formation to induce ribosomal stalling.
Resolution	2.9 Å
Binding residue (original residue number in PDB)	S73 V74 A75
Binding residue (residue number reindexed from 1)	S72 V73 A74

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0000049	tRNA binding
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome
GO:0008097	5S rRNA binding
GO:0019843	rRNA binding

	Biological Process
GO:0000027	ribosomal large subunit assembly
GO:0002181	cytoplasmic translation
GO:0006412	translation

	Cellular Component
GO:0005737	cytoplasm
GO:0005829	cytosol
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

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External links

PDB	RCSB:5nwy, PDBe:5nwy, PDBj:5nwy
PDBsum	5nwy
PubMed	28556777
UniProt	P62399\|RL5_ECOLI Large ribosomal subunit protein uL5 (Gene Name=rplE)

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