Structure of PDB 6lqv Chain RY Binding Site BS01

Receptor Information
>6lqv Chain RY (length=37) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KGRKLNYSVQDPIANYEAPITSGYKWSDDQIDEFFAG
Ligand information
>6lqv Chain SA (length=950) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
aagauaguuaucugguugauccugccaguagucauaugcuugucucagcc
augcaugucuaaguauaagcaauuuauacagugaaacugcgaaggcucau
uaaaucaguuaucguuuauuugauaguuccaugguauaacugugguaauu
cuagagcuaauacaugcuaaucucgacccuuuggaagagauguauuuauu
agaucaaugucuucggacucuuugaugaaauaacuuuucgaaucgcaugg
ccuugugcuggcgaugguucauucaaauuucugcccuaucaacuuucgau
gguaggauaguggccuaccaugguuucaacggguaacggggaauaagggu
ucgauuccggagagggagccugagaaacggcuaccacauccaaggaaggc
agcaggccaaauuacccaauccuaauucagggagguagugacaauaaaua
acgauacagggcccauucgggucuuguaauuggaaugaguacaauguaaa
uaccuuaacgaggaacaauuggagggcaagucuggugccagcagccgcgg
uaauuccagcuccaauagcguauauuaaaguuguugcagcuggggggagu
auggucgcaaggcugaaacuuaaaggaauugacggaagggcaccaccagg
aguggagccugcggcucaacacggggaaacucaccagguccagacacaau
aaggauugacauucuugauuuugugggugguggugcauugaugcccuugu
ucugggccacgcgcgcuacacugacggagccagcgagucuagugaaacuc
cgucgugcuggcaacgaggaauuccuaguaagcgcaagucaucagcuugc
guugauuacgucccugcccuuuguacacaccgcccgucgcuaguaccgau
ugaauggcuuagugaggcgacaaacuuggucauuuagaggaacuaaaagu
............................<<<<.<<<<<<........<<<
.<<...<<....<<....<<..........>>...>>.>>.....<<<..
.....<<<..<<..<<....<<<..........<.....<<.<<......
.>>.>>......>.......<<<<............>>>>.....<<<<<
...<<<<..............>>>>...>>>>>.........<<<<...<
<.....>>..>>>>....>>>...>>>>..>>>.<<<....<<<....<<
<<<<<<.......>>>>>>>>>>>......>>>.....<<..........
.....>>..>>>.<<.<<<..........>>>.>>.<.<<....>>.>..
..>>>>>......<<<....<<<.....>>>..>>>..............
.<<<<<<<.<<<<<....>>>>>.>>>.>>>>......<<..<.......
....>..>>.........<<<<<<.......<<<....>>>.........
.........>>>>>>..>>>>>>>>>>.........<....>........
............<<.........>>.....<<<<<<<<<<<<..<<.<<<
<<<..<<<.<<<<.......................<<.<....<<<<<.
.......<.....>......>>>>>......<<<........>>>...>.
>>.......>>>>.>>>.....<<<<<<<..................>>>
>>>>................>>>>>>....<<<<<<<<.......>>>>>
>>>......>>...>>>>>>>............>>>>>..<<<<.<<...
..<<<<<<<.<<<..<....>..>>>.>>>>>>>....>>.>>>>.....
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6lqv Cryo-EM structure of 90 S small ribosomal subunit precursors in transition states.
Resolution4.8 Å
Binding residue
(original residue number in PDB)		G461 R462
Binding residue
(residue number reindexed from 1)		G2 R3
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003674 molecular_function
GO:0005515 protein binding
Biological Process
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0006364 rRNA processing
GO:0015031 protein transport
GO:0016192 vesicle-mediated transport
Cellular Component
GO:0005634 nucleus
GO:0005730 nucleolus
GO:0030686 90S preribosome
GO:0032040 small-subunit processome

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6lqv, PDBe:6lqv, PDBj:6lqv
PDBsum6lqv
PubMed32943522
UniProtQ06631|BFR2_YEAST Protein BFR2 (Gene Name=BFR2)

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