Structure of PDB 7oyc Chain R1 Binding Site BS01

Receptor Information
>7oyc Chain R1 (length=166) Species: 8355 (Xenopus laevis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLVKDGLII
RKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKLSWMRRMRI
LRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKAR
KKLLADQAEARRSKTK
Ligand information
>7oyc Chain 22 (length=1495) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uaccugguugauccugccaguagcauaugcuugucucaaagauuaagcca
ugcacguguaaguacgcacggagugaaacugcgaauggcucauuaaauca
guuaugguuccuuugaucacuuggauaacugugguaauucuagagcuaau
acauggcauuuaucaguggugacucuagauaaccgccgaucgcacgcacg
gcgacgauacauucggaugucugcccuaucaacuuucgaugguacuuucu
gcgccuaccauggugaccacggguaacggggaaucaggguucgauuccgg
agagggagccugagaaacggcuaccacauccaaggaaggcagcaggcgcg
caaauuacccacucccgacgcggggagguagugacgaaaaauaacaauuu
ggaaugaguacacuuuaaauccuuuaacgaggaucuauuggagggcaagu
cuggugccagcagccgcgguaauuccagcuccaauagcguauauuaaagu
ugcugcaguuaaaaagcucguaguuggaucuuguuuacuuugaaaaaauu
agaguguuccaagcaggccgccuggauacuucagcuaggaauaauggaau
aggacuccggggccaugauuaagagggacggccgggggcauucguauugu
gccgcuagaggugaaauucuuggaccggcgcaagacgaaccaaagcgaaa
gcauuugccaagaauguuuucauuaaucaagaacgaaagucggagguucg
aagacgaucagauaccgucguaguuccgaccauaaacgaugccgacuagc
gauccggcggcguuagacccgccgagcagcuuccgggaaaccaaagucuu
uggguuccggggggaguaugguugcaaagcugaaacuuaaaggaauugac
ggaagggcaccaccaggaguggagccugcggcuuaauuugacucaacacg
ggaaaccucacccggcccggacaauugacagauuucucgauucugugggu
gguggugcauggccguucuuaguugguggagcgauuugucugguuaauuc
cgauaacgaacgagacuccuccaugcuaacuaguuacgcgaccggucggc
guaacuucuuagagggacaaguggcguucagccacacgagaucgagcaau
aacaggucugugaugcccuuagauguccggggcugcacgcgcgcuacacu
gaacggaucagcguguccugcgccgacaggugcggguaacccgcugaacc
ccguucgugauagggaucggggauugcaauuauuucccaugaacgaggaa
uucccaguaagugcgggucauaagcucgcguugauuaagucccugcccuu
uguacacaccgcccgucgcuacuaccgauuggaugguuuagugagguccu
cggaucggcgccgagaagacgaucaaacuugacuaucuagaggaaguaaa
agucguaacaagguuuccguaggugaaccugcggaaggaucauua
...<<<<<.[.((((>>>>><<<.<<<<<<...<.<<.........<<<.
<<<..<<....<.....<<...>>....>.>>......<<........<<
<.<<<..<<....<<<<<...<<.....<<.<<<.....>>>.>>.....
.>>..<<..<<<<<...<......>..>>>>>..>>...<<<<.<<..>>
>>>>.>>>.>>...>>>>>.>>>.<<<....<<<....<<<<<<......
.....>>>>>>>>>......>>>...<<<.<<<<....>>>>....>>>.
>>.<<.<<<..........>>>.>>.<.<<....>>.>...>>>>>>...
......<<<....<<<<...>>>>..>>>......>>.>.....<<<.>>
>......<<..<...........>..>>.........<<<<<((......
<<<<.....<<..))>>.......>>>>.>>>>>..>>>>>>.>>>....
.....<.<((.....<.<<...<<<.<<......<<<<<<.<.......<
<...<.......>.<<<<.>>>>...>>......>.>>>..>>>......
..<.<<<..>>>.>....>>....<<<<<<..<...<<<<..<<..<<<<
<<<<...<<<......>>>......>>>>>>>.>.>>.......<<....
>>...>>>>..>..>>>.>>>...>>>...>>.>....<<<<<<<...<.
..<<<<.<.....>.>>>>...>>>>>>>>..........<<<.<<.<<<
..<.<<<<<<.<<<.>>>>>>>>>.>..>>>...<<..))>>...>>...
..>>>.>.>.<<<......<<<......>>>....>>>..)))).]<<<<
<.<<<<<<<..<<..<<<<<..<<<.<<<<<<......<<........>>
..........<<<<<......<....<<......>>..........>...
<<.<<<..<<<<<<<<.....<<<.<<<<<....>>>...<<<......>
>>...>>.>>>....<<<..<<...<<<<..<<<<<<<<<<<..>>>.>>
>>>>>>..>>>>..>>....<<<<<.....>>>>>........>>>....
.>>.>>>...>.>>>>>>>.......>>>>>...>>.>>>>.>>>.....
<<<<<<........<.<<<<<<<<....>>>>>>>>....>.........
>>>>>>......<.....<<<<<..........>>>>>.....>.....>
>>>>.....<<<<<<<<.......>>>>>>>>......>>...>>>>>>>
>>>.>>....<..<<.<..<<<<.<<....<<<<<<<<.<<<..<<<<.<
<...<<<<<>>>>>...>>.>>>>..>>>.>>>>>>>>...>>.>>>>..
.>.>>...>.....<<<<<<<<<<..>>>>>>>>>>.........
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7oyc A molecular network of conserved factors keeps ribosomes dormant in the egg.
Resolution2.4 Å
Binding residue
(original residue number in PDB)		R162 R163
Binding residue
(residue number reindexed from 1)		R161 R162
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:7oyc, PDBe:7oyc, PDBj:7oyc
PDBsum7oyc
PubMed36653451
UniProtQ7ZYS1|RL19_XENLA Large ribosomal subunit protein eL19 (Gene Name=rpl19)

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