Structure of PDB 7oya Chain R1 Binding Site BS01

Receptor Information
>7oya Chain R1 (length=166) Species: 7955 (Danio rerio) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLVKDGLII
KKPVTVHSRARCRKNTLARRKGRHMGVGKRKGTANARMPEKLCWMRRMRI
LRRLLRRYREAKKIDRHMYHSLYLRAKGNVFKNKRILMEHIHKLKADKAR
KKLLADQAEARRTKTR
Ligand information
>7oya Chain 22 (length=1531) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uaccugguugauccugccaguaauauaugcuugucucaaagauuaagcca
ugcaagucuaagugcacacgagugaaacugcgaauggcucauuaaaucag
uuaugguuccuuugaucacuuggauaacuguggcaauuccagagcuaaua
caugcgcgccgagacgcgugcauuuaucaguggugacucuagauaaccuc
gggccgaucgcgcgccggcggcgacgguucauucgaaugucugcccuauc
aacuuucgaugguagguccgucgccuaccauggugaccacgggugacggg
gaaucaggguucgauuccggagagggagccugagaaacggcuaccacauc
caaggaaggcagcaggcgcgcaaauuacccauuuccgacacggagaggua
gugacgaaaaauaacaaugaauuggaaugagugcaucccaaacccauggg
cgaggacccauuggagggcaagucuggugccagcagccgcgguaauucca
gcuccaauagcguaugcuaacguugcugcaguuaaaaagcucguaguugg
aucucuacuuugaaaaaauuagaguguucaaggcagggccccccauugaa
uaccccagcuaggaauaauggaauaggaccccggggccaugaucgagagg
gacggccgggggcauucguauugcgccgcuagaggugaaauucuuggacc
ggcgcaagacggaccggagcgaaagcguuugccaagaacguuuucauuaa
ucaagaacgaaagucggagguucgaagacgaucagauaccgucguaguuc
cgaccguaaacgaugccgacccgcgauccggcggcguuugacccgccggg
cagcguugcgggaaaccacgagucucugggcuccggggggaguaugguug
caaagcugaaacuuaaaggaauugacggaagggcaccaccaggaguggag
ccugcggcuuaauuugacucaacacggggaaccucacccggcccggacac
ggaaaggauugacagauugacggcucuuucucgauucugugggugguggu
gcauggccguucguaguugguggagcgauuugucugguugauuccgauaa
cgaacgagacucuggcaugcuaacuaguuacgcggccgucggcguaacuu
cuuagagggacaaguggcguucagccacgcgagacugagcaauaacaggu
cugugaugcccuuagauguccggggcugcacgcgcgccacaaugggcgga
ucaacguguccugcgccgacaggcgcggguaacccguugaaccccgcccg
ugauggggaccgauugaaacuauuucccgagaacgaggaauucccaguaa
gcgcaggucaucagcuugcguugauuaagucccugcccuuuguacacacc
gcccgucgcuacuaccgauugagcggcucagugagguccucggaucgcga
gaagacgaucgaacucggucguuuagaggaaguaaaagucguaacaaggu
uuccguaggugaaccugcggaaggaucauua
...<<<<<.[.((((>>>>><<.<<<<<<<...<.<<..<......<<<.
<<<..<<....<<.............>>.>>......<<........<<<
.<<<..<<....<<<.....<<.....<<.<<<.....>>>.>>......
>>....<<<......>>>.<<..<<<<<...<......>..>>>>>....
..>>...<<<<.<<<..>>>>>>>....>>>...>>>>>.>>>.<<<...
.<<<....<<<<<<<<.......>>>>>>>>>>>......>>>...<<<.
<<<<....>>>>....>>>.>>.<<.<<<..........>>>.>>.<.<<
....>>.>...>>>>>>.........<<<....<<<<...>>>>..>>>.
.>...>>.>.....<<<....>>>......<<.<<<.........>>>.>
>.........<<<<<((......<<<<.....<<..))>>.......>>>
>.>>>>>..>>>>>>>.>>.........<.<((.....<.<<...<<<.<
<....<<<<<.<.......<<...<.......>...<<....>>......
>>......>.>>>..>>.........<.<<<..>>>.>....>>....<<
<<<<..<...<<<<..<<..<<<<<<<<...<<<......>>>......>
>>>>>>>..>>.......<<....>>...>>>>..>..>>>.>>>...>>
>...>>.>....<<<<<<<...<...<<<<.<.....>.>>>>...>>>>
>>>>..........<<<.<<.<<<..<<<<<<<<.<<<.>>>>>>>>>>>
..>>>....<<..))>>....>>.....>>>.>.>.<<<......<<<..
....>>>....>>>..)))).]<<<<<.<<<<<<...<...<<<<<...<
<.<<<<<<......<<........>>..........<<<<<.<.......
.<........<<..<<........>>..>>.......>....<.<<.<<<
..<<.<<<<<<....<<<.<<<<<....>>>...<<<......>>>...>
>.>>>....<<<.......<<<<..<<<<<<<<<<<.>>>.>>>>>>>>.
.>>>>........<<<<<.....>>>>>........>>>....>>>.>>>
.....>>>>>>>>....>.>>>>>...>>.>>>>.>>......<<<<<<.
.......<.<<<<<<<<....>>>>>>>>....>.........>>>>>>.
..........<<<...........>>..>..........>>>>>.....<
<<<<<<<.......>>>>>>>>.......>....>>>>>>>>>.>>....
<..<<.<..<<<<.<<....<<<<<<<<.<<<..<<<<.<<...<<..>>
...>>.>>>>..>>>.>>>>>>>>...>>.>>>>...>.>>...>.....
<<<<<<<<<<..>>>>>>>>>>.........
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7oya A molecular network of conserved factors keeps ribosomes dormant in the egg.
Resolution3.2 Å
Binding residue
(original residue number in PDB)		R163 K165 T166
Binding residue
(residue number reindexed from 1)		R162 K164 T165
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
GO:0030097 hemopoiesis
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
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Biological Process
View graph for
Cellular Component
External links
PDB RCSB:7oya, PDBe:7oya, PDBj:7oya
PDBsum7oya
PubMed36653451
UniProtQ6P5L3|RL19_DANRE Large ribosomal subunit protein eL19 (Gene Name=rpl19)

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