Structure of PDB 9cuz Chain R Binding Site BS01
Receptor Information
>9cuz Chain R (length=537) Species:
1209382
(Bufavirus-1) [
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SGVGHSTGNYNNRTEFYYHGDEVTIVCHSSRHIHLNMSESEEYKIYDTDR
GPRFPTDQTLQGRDTINDSYHAQVETPWFLINPNSWGTWMNPADFQQLTT
TCREVTLEHLDQTLDNIVIKTVSKQGSGAEETTQYNNDLTALLQVALDKS
NQLPWVADNMYLDSLGYIPWRPCKLKQYSYHVNFWNTIDIISGPQQNQWQ
QVKKEIRWDDLQFTPIETTTEIDLLRTGDSWTSGPYKFNTKPTQLSYHWQ
STRHTGSVHPTDPPNAIGQQGQNIRDINGWQWGDRSDPMSAATRVSNFHI
GYSWPEWRIHYGSGGPAINPGAPFSQAPWSTDPQVRLTQGASEKAIFDYN
HGDDDPAHRDQWWQNNLPITGQTNWAPKNAHQANLSSNVPSRQEFWTQDY
HNTFGPFTAVDDVGIQYPWGAIWTKTPDTTHKPMMSAHAPFICKDGPPGQ
LLVKLAPNYTENLQTDGLGNNRIVTYATFWWTGKLILKGKLRLPRQFNLY
NLPGRPRGTEAKKFLPNEIGHFELPFMPGRCMPNYTM
Ligand information
Ligand ID
SIA
InChI
InChI=1S/C11H19NO9/c1-4(14)12-7-5(15)2-11(20,10(18)19)21-9(7)8(17)6(16)3-13/h5-9,13,15-17,20H,2-3H2,1H3,(H,12,14)(H,18,19)/t5-,6+,7+,8+,9+,11+/m0/s1
InChIKey
SQVRNKJHWKZAKO-YRMXFSIDSA-N
SMILES
Software
SMILES
CACTVS 3.341
CC(=O)N[CH]1[CH](O)C[C](O)(O[CH]1[CH](O)[CH](O)CO)C(O)=O
OpenEye OEToolkits 1.5.0
CC(=O)NC1C(CC(OC1C(C(CO)O)O)(C(=O)O)O)O
OpenEye OEToolkits 1.5.0
CC(=O)N[C@@H]1[C@H](C[C@@](O[C@H]1[C@@H]([C@@H](CO)O)O)(C(=O)O)O)O
ACDLabs 10.04
O=C(O)C1(O)OC(C(O)C(O)CO)C(NC(=O)C)C(O)C1
CACTVS 3.341
CC(=O)N[C@@H]1[C@@H](O)C[C@@](O)(O[C@H]1[C@H](O)[C@H](O)CO)C(O)=O
Formula
C11 H19 N O9
Name
N-acetyl-alpha-neuraminic acid;
N-acetylneuraminic acid;
sialic acid;
alpha-sialic acid;
O-SIALIC ACID
ChEMBL
CHEMBL1234621
DrugBank
DB03721
ZINC
ZINC000004081651
PDB chain
9cuz Chain R Residue 601 [
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Receptor-Ligand Complex Structure
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PDB
9cuz
Structural Characterization of Human Bufavirus 1: Receptor Binding and Endosomal pH-Induced Changes.
Resolution
2.16 Å
Binding residue
(original residue number in PDB)
R368 K376 D392 Q393 W394 W395 K545
Binding residue
(residue number reindexed from 1)
R336 K344 D360 Q361 W362 W363 K513
Annotation score
4
External links
PDB
RCSB:9cuz
,
PDBe:9cuz
,
PDBj:9cuz
PDBsum
9cuz
PubMed
39205232
UniProt
A0A097PIM0
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