Structure of PDB 8uu5 Chain R Binding Site BS01

Receptor Information
>8uu5 Chain R (length=113) Species: 1642 (Listeria innocua) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MNKLIDEITKSQLNPDVPSFRPGDTVRVHAKVVEGTRERIQLFEGVVIKR
RGAGISETFTVRKISNGVGVERTFPVHTPRIAKLEVIRRGKVRRAKLYYL
RNLRGKAARIKEI
Ligand information
>8uu5 Chain a (length=1523) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
aaagagaguuugauccuggcucaggacgaacgcuggcggcgugccuaaua
caugcaagucgaacgaacggagguccaaaguuaguggcggacgggugagu
aacacgugggcaaccugccuguaaguuggggauaacuccgggaaaccggg
gcuaauaccgaaugauagaguguggcgcaugccacgcucuugaaagaugg
uuucggcuaucgcuuacagaugggcccgcggugcauuagcuaguugguag
gguaauggccuaccaaggcaacgaugcauagccgaccugagagggugauc
ggccacacugggacugagacacggcccagacuccuacgggaggcagcagu
agggaaucuuccgcaauggacgaaagucugacggagcaacgccgcgugua
ugaagaagguuuucggaucguaaaguacuguuguuagagaagaacaagga
uaagaguaacugcuugucccuugacgguaucuaaccagaaagccacggcu
aacuacgugccagcagccgcgguaauacguagguggcaagcguuguccgg
auuuauugggcguaaagcgcgcgcaggcggucuuuuaagucugaugugaa
agcccccggcuuaaccggggagggucauuggaaacuggaagacuggagug
cagaagaggagaguggaauuccacguguagcggugaaaugcguagauaug
uggaggaacaccaguggcgaaggcgacucucuggucuguaacugacgcug
aggcgcgaaagcguggggagcaaacaggauuagauacccugguaguccac
gccguaaacgaugagugcuaaguguuaggggguuuccgccccuuagugcu
gcagcuaacgcauuaagcacuccgccuggggaguacgaccgcaagguuga
aacucaaaggaauugacgggggcccgcacaagcgguggagcaugugguuu
aauucgaagcaacgcgaagaaccuuaccaggucuugacauccuuugacca
cucuggagacagagcuuucccgggacaaagugacagguggugcaugguug
ucgucagcucgugucgugagauguuggguuaagucccgcaacgagcgcaa
cccuugauuuuaguugccagcauuuaguugggcacucuaaagugacugcc
ggugcaagccggaggaagguggggaugacgucaaaucaucaugccccuua
ugaccugggcuacacacgugcuacaauggaugguacaaagggucgcgaag
ccgcgagguggagccaaucccauaaaaccauucucaguucggauuguagg
cugcaacucgccuacaugaagccggaaucgcuaguaaucguggaucagca
ugccacggugaauacguucccgggccuuguacacaccgcccgucacacca
cgagaguuuguaacacccgaagucgguaggguaaccggagccagccgccg
aaggugggacagauaauuggggugaagucguaacaagguagccguaucgg
aaggugcggcuggaucaccuccu
.....<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<.....<<
<.<<<..<<<..<<..<<...<...>...>>..>>>>>......<<....
....<<<<<<<..<<...<<<<<<<<<.<<.....<<<<<<....>>>>>
>......>>.>.....<<<<<<<<<<....>>>>>>>>>>.....<<<<<
<....>>>>>>>>>>>>>>..>>>>>>>>>.<<<....<<<..<<<<<<<
<.......>>>>>>>>>>>......>>>..<<<<<<<<....>>>>...>
>>>.>>.<<<<<.<.........>>>>>>.<<<<<..>>>>>...>>>>>
>.........<<<....<<<<....>>>>..>>>..>>.>>>>>>..<<<
<......<<<<....>>>>.....>>>>...<<<<<<<.......<.<<<
<<<<........>>>>>>>.>........>>>>>>...>..<<<<<(((.
..<<<<<.....<<.)))>>.......>>>>>>>>>>..>>>>>>>>>..
........<<<((.....<<<<...<<<.<<<<<<<.<<<<<<<<<....
...<<<<<<.....>>>>>>.....>>>>>>>..>>>>>>>>>...<<<<
<<<<...<<<<<<<....<<<<<<<<<..<<<......>>>.....>>>>
>>>>>...........<<....>>.>>>>>>>..>>>>>.>>>...>>>.
..>>>>....<<<<<<...<<...<<<<.<.....>.>>>>...>>>>>>
>>..........<<<<<<..<<<<<<<<<<<<<....>>>>>>>>>>>>>
...<<..))>>.....>>>>>>.>>>.<<<......<<<<....>>>>..
..>>>..)))).]<<<<<.<<<<<<<.<<.<<<<<<..<<<<<<<<<<..
....<<........>>..........<<<<<<<......<<<<<<.....
<<<<<....>>>>>....<<<>>>..>>>>.>>.<<<.<<<..<<<<<<.
......<<<<<<<<<....>>>..<<<<......>>>>..>>>>>>....
.<<<<.<<<<<<<..<<<..<<......>>>>>...>>>>>>>.....<<
<<<....>>>>>........>>>>.........>>>...>>>>>>>>>..
.>>>>>>>...>>.>>>>>>>>.....<<<<<<<.....<<<..<<...<
<<....>>>...>>....>>>.....>>>>>>>......<....<<<<<<
<........>>>>>>>....>.....>>>>>>....<<<<<<<.......
..>>>>>>>......>>...>>>>>>>>>>.>>....<..<<.<.<<<<.
<<<..<<<<<<..<<<<....<.<<<<..<<<..<<>>.>>>.>>>>.>.
..>>>>..>>>>>>..>>>.>>>>..>.>>...>.....<<<<<<<<<..
..>>>>>>>>>............
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8uu5 Mechanistic insights into the alternative ribosome recycling by HflXr.
Resolution3.0 Å
Binding residue
(original residue number in PDB)		R39 G105 K106 R109
Binding residue
(residue number reindexed from 1)		R39 G105 K106 R109
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8uu5, PDBe:8uu5, PDBj:8uu5
PDBsum8uu5
PubMed38407413
UniProtA0A6B0JQF2

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