Structure of PDB 8q4f Chain R Binding Site BS01

Receptor Information
>8q4f Chain R (length=66) Species: 562 (Escherichia coli) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KFCRFTAEGVQEIDYKDIATLKNYITESGKIVPSRITGTRAKYQRQLARA
IKRARYLSLLPYTDRH
Ligand information
>8q4f Chain A (length=1512) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
aauugaagaguuugaucauggcucagauugaacgcuggcggcaggccuaa
cacaugcaagucgaacgguaacaggaagaagcuugcuucuuugcugacga
guggcggacgggugaguaaugucugggaaacugccugauggagggggaua
acuacuggaaacgguagcuaauaccgcauaacgucgcaagaccaaagagg
gggccucuugccaucggaugugcccagaugggauuagcuaguaggugggg
uaacggcucaccuaggcgacgaucccuagcuggucugagaggaugaccag
ccacacuggaacugagacacgguccagacuccuacgggaggcagcagugg
ggaauauugcacaaugggcgcaagccugaugcagccaugccgcguguaug
aagaaggccuucggguuguaaaguacuucagcggggaggaagggaguaaa
guuaauaccuuugcucauugacguuacccgcagaagaagcaccggcuaac
uccggccagcagcccgguaauacggagggugcaagcguuaaucggaauua
cugggcguaaagcgcacgcaggcgguuuguuaagucagaugugaaauccc
cgggcucaaccugggaacugcaucugauacuggcaagcuugagucucgua
gagggggguagaauuccagguguagcggugaaaugcguagagaucuggag
gaauaccgguggcgaaggcggcccccuggacgaagacugacgcucaggug
cgaaagcguggggagcaaacaggauuagauacccugguaguccacgccgu
aaacgaugucgacuuggagguugugccggcguggcuuccggagcuaacgc
guuaagucgaccgccuggggaguacggccgcaagguuaaaacucaaauga
auugacgggggcccgcacaagcgguggagcaugugguuuaauucgauaac
gcgaagaaccuuaccuggucuugacauccacggaaguuuucagagaugag
aaugugccuucgggaaccgugagacaggugcugcauggcugucgucagcu
cguguugugaaauguuggguuaagucccgcaacgagcgcaacccuuaucc
uuuguugccagcgguccggccgggaacucaaaggagacugccagugauaa
acuggaggaagguggggaugacgucaagucaucaugcccuuacgaccagg
gcacacacgugcuacaauggcgcauacaaagagaagcgaccucgcgagag
caagcggaccucauaaagugcgucguaguccggauuggagucugcaacuc
gacuccaugaagucggaaucgcuaguaaucguggaucagaaugccacggu
gaauacguucccgggccuuguacacaccgcccgucacaccaugggagugg
guugcaaaagaaguagguagcuuaaccuucgggagggcgcuuaccacuuu
gugauucaugacuggggugaagucguaacaagguaaccguaggggaaccu
gcgguuggauca
.......<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<.....
<<<.<<<..<<<..<<.<...<<<<<<............>>>.>>>.>..
>>>>>......<<.......<<<<<<<..<<...<<<<<<<.<.<<....
.<<<<<......>>>>>......>>.>.....<<<....>>.>...<<<<
<<.>>>>>>.>>>>>>>..>>.>>>>>>><<<....<<<..<<<<<<<..
.......>>>>>>>>>>......>>>..<<<<<<<<....>>>>...>>>
>.>>.<<<<.<<.........>>>>>>.<<<<....>>>>...>>>>>>.
........<<<....<<<<....>>>>..>>>..>>.>>>>>>..<<<<.
......<<.<...>>>......>>>>..<.<<..<......<.<<<<<<<
.........>>>>>>>.>........>..>>....>..<<<<<(((...<
<<<<.......)))........>>>>>>>>>>..>>>>>>>>>.......
...<<<((.....<<<<...<<<.<<<<<<<.<<<<<<<<<<......<<
<<<<.....>>>>>>....>>>>>>>>..>>>>>>>>>...<<<<<<<<.
..<<<<<<<....<<<<<<<<...<<<......>>>......>>>>>>>.
>..........<<....>>.>>>>>>>..>>>>.>>>>...>>>...>>>
>....<<<<<<...<<...<<<<.<.....>.>>>>...>>>>>>>>...
.......<<<<<<.<<<<<<<<<<......>>>>>>>>>>..<<..))>>
.....>>>>>>.>>>.<<<......<<<<....>>>>....>>>..))))
.]<<<<<.<<<<<<<.<<.<<<<<<..<<<<<<<<<<......<<.....
.>>..........<<<<<<<......<<.<<<<.....<<<......>>>
......<<....>>..>>>>..>>..<.......<<<<<<.......<<<
<<<<<<....>>>..<<<<......>>>>..>>>>>>.....<<<<.<<<
<<<<...<...<<.......>>.>....>>>>>>>.....<<<<<.....
>>>>>........>>>>.........>>>...>>>....>...>>>>>>>
..>>.>>>>>>>>.....<<<<.........<<..<<...<<<....>>>
...>>....>>.........>>>>......<....<<<<<<<........
>>>>>>>....>.....>>>>>>.....<<<<<<.........>>>>>>.
......>>...>>>>>>>>>>.>>....<..<<.<.<<<<.<<<..<<<<
<<<<<<<<....<<<<<<.<<<<..<<....>>.>>>>>>>>>>...>>>
>>>>>>>>>..>>>.>>>>..>.>>...>.....<<<<<<<<<....>>>
>>>>>>......
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB8q4f Structure of arbekacin bound Escherichia coli 70S ribosome
Resolution3.1 Å
Binding residue
(original residue number in PDB)
K38 I39 S42 K50 R53 R57 K60 R61 R63 Y70 H74
Binding residue
(residue number reindexed from 1)
K30 I31 S34 K42 R45 R49 K52 R53 R55 Y62 H66
External links
PDB RCSB:8q4f, PDBe:8q4f, PDBj:8q4f
PDBsum8q4f
PubMed
UniProtP0A7T7|RS18_ECOLI Small ribosomal subunit protein bS18 (Gene Name=rpsR)

[Back to BioLiP]