Structure of PDB 8om1 Chain R Binding Site BS01
Receptor Information
>8om1 Chain R (length=95) Species:
10090
(Mus musculus) [
Search protein sequence
] [
Download receptor structure
] [
Download structure with residue number starting from 1
] [
View receptor structure
]
GVQVSPSGEKITHTGQVYDEKDYRRVRFVDRQKEVNENFAIDLIAQQPVN
EVEHRIIACDGGGGALGHPKVYINLDKETKTGTCGYCGLQFKQHH
Ligand information
Ligand ID
ZN
InChI
InChI=1S/Zn/q+2
InChIKey
PTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
Software
SMILES
CACTVS 3.341
[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0
[Zn+2]
Formula
Zn
Name
ZINC ION
ChEMBL
CHEMBL1236970
DrugBank
DB14532
ZINC
PDB chain
8om1 Chain R Residue 201 [
Download ligand structure
] [
Download structure with residue number starting from 1
] [
View ligand structure
]
Receptor-Ligand Complex Structure
Global view
Local view
Structure summary
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
PDB
8om1
Investigation of hydrated channels and proton pathways in a high-resolution cryo-EM structure of mammalian complex I.
Resolution
2.39 Å
Binding residue
(original residue number in PDB)
C59 H68 C84 C87
Binding residue
(residue number reindexed from 1)
C59 H68 C84 C87
Annotation score
4
Enzymatic activity
Enzyme Commision number
?
Gene Ontology
Molecular Function
GO:0003674
molecular_function
Biological Process
GO:0001822
kidney development
GO:0006120
mitochondrial electron transport, NADH to ubiquinone
GO:0006631
fatty acid metabolic process
GO:0006936
muscle contraction
GO:0007005
mitochondrion organization
GO:0009060
aerobic respiration
GO:0010467
gene expression
GO:0017145
stem cell division
GO:0022904
respiratory electron transport chain
GO:0030330
DNA damage response, signal transduction by p53 class mediator
GO:0032981
mitochondrial respiratory chain complex I assembly
GO:0035264
multicellular organism growth
GO:0042391
regulation of membrane potential
GO:0042776
proton motive force-driven mitochondrial ATP synthesis
GO:0051881
regulation of mitochondrial membrane potential
GO:0061458
reproductive system development
GO:0072359
circulatory system development
GO:0072497
mesenchymal stem cell differentiation
GO:0072593
reactive oxygen species metabolic process
GO:0090398
cellular senescence
GO:0097168
mesenchymal stem cell proliferation
Cellular Component
GO:0005739
mitochondrion
GO:0005743
mitochondrial inner membrane
GO:0045271
respiratory chain complex I
View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB
RCSB:8om1
,
PDBe:8om1
,
PDBj:8om1
PDBsum
8om1
PubMed
37531432
UniProt
P52503
|NDUS6_MOUSE NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial (Gene Name=Ndufs6)
[
Back to BioLiP
]