Structure of PDB 8om1 Chain R Binding Site BS01

Receptor Information
>8om1 Chain R (length=95) Species: 10090 (Mus musculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GVQVSPSGEKITHTGQVYDEKDYRRVRFVDRQKEVNENFAIDLIAQQPVN
EVEHRIIACDGGGGALGHPKVYINLDKETKTGTCGYCGLQFKQHH
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0
[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain8om1 Chain R Residue 201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB8om1 Investigation of hydrated channels and proton pathways in a high-resolution cryo-EM structure of mammalian complex I.
Resolution2.39 Å
Binding residue
(original residue number in PDB)
C59 H68 C84 C87
Binding residue
(residue number reindexed from 1)
C59 H68 C84 C87
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003674 molecular_function
Biological Process
GO:0001822 kidney development
GO:0006120 mitochondrial electron transport, NADH to ubiquinone
GO:0006631 fatty acid metabolic process
GO:0006936 muscle contraction
GO:0007005 mitochondrion organization
GO:0009060 aerobic respiration
GO:0010467 gene expression
GO:0017145 stem cell division
GO:0022904 respiratory electron transport chain
GO:0030330 DNA damage response, signal transduction by p53 class mediator
GO:0032981 mitochondrial respiratory chain complex I assembly
GO:0035264 multicellular organism growth
GO:0042391 regulation of membrane potential
GO:0042776 proton motive force-driven mitochondrial ATP synthesis
GO:0051881 regulation of mitochondrial membrane potential
GO:0061458 reproductive system development
GO:0072359 circulatory system development
GO:0072497 mesenchymal stem cell differentiation
GO:0072593 reactive oxygen species metabolic process
GO:0090398 cellular senescence
GO:0097168 mesenchymal stem cell proliferation
Cellular Component
GO:0005739 mitochondrion
GO:0005743 mitochondrial inner membrane
GO:0045271 respiratory chain complex I

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component
External links
PDB RCSB:8om1, PDBe:8om1, PDBj:8om1
PDBsum8om1
PubMed37531432
UniProtP52503|NDUS6_MOUSE NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial (Gene Name=Ndufs6)

[Back to BioLiP]