Structure of PDB 8k2w Chain R Binding Site BS01

Receptor Information
>8k2w Chain R (length=285) Species: 562,9606 [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AFLPALYSLLFLLGLLGNGAVAAVLLSRRTALSSTDTFLLHLAVADTLLV
LTLPLWAVDAAVQWVFGSGLCKVAGALFNINFYAGALLLACISFDRYLNI
VHATQLYRRGPPARVTLTCLAVWGLCLLFALPDFIFLSAHHDERLNATHC
QYNFPQVGRTALRVLQLVAGFLLPLLVMAYCYAHILARLKSVRLLSGSRE
KDRNLRRITRLVVVVVVAFALCWTPYHLVVLVDILMDLGALARNCGRESR
VDVAKSVTSGLGYMHCCLNPLLYAFVGVKFRERMW
Ligand information
Ligand IDCLR
InChIInChI=1S/C27H46O/c1-18(2)7-6-8-19(3)23-11-12-24-22-10-9-20-17-21(28)13-15-26(20,4)25(22)14-16-27(23,24)5/h9,18-19,21-25,28H,6-8,10-17H2,1-5H3/t19-,21+,22+,23-,24+,25+,26+,27-/m1/s1
InChIKeyHVYWMOMLDIMFJA-DPAQBDIFSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0CC(C)CCCC(C)C1CCC2C1(CCC3C2CC=C4C3(CCC(C4)O)C)C
CACTVS 3.341CC(C)CCC[C@@H](C)[C@H]1CC[C@H]2[C@@H]3CC=C4C[C@@H](O)CC[C@]4(C)[C@H]3CC[C@]12C
ACDLabs 10.04OC4CCC3(C(=CCC2C1C(C(C(C)CCCC(C)C)CC1)(C)CCC23)C4)C
OpenEye OEToolkits 1.5.0CC(C)CCC[C@@H](C)[C@H]1CC[C@@H]2[C@@]1(CC[C@H]3[C@H]2CC=C4[C@@]3(CC[C@@H](C4)O)C)C
CACTVS 3.341CC(C)CCC[CH](C)[CH]1CC[CH]2[CH]3CC=C4C[CH](O)CC[C]4(C)[CH]3CC[C]12C
FormulaC27 H46 O
NameCHOLESTEROL
ChEMBLCHEMBL112570
DrugBankDB04540
ZINCZINC000003875383
PDB chain8k2w Chain R Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB8k2w Structure basis for the modulation of CXC chemokine receptor 3 by antagonist AMG487
Resolution3.0 Å
Binding residue
(original residue number in PDB)		H94 L130 W176
Binding residue
(residue number reindexed from 1)		H41 L77 W123
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0004930 G protein-coupled receptor activity
GO:0004950 chemokine receptor activity
GO:0005506 iron ion binding
GO:0009055 electron transfer activity
GO:0016494 C-X-C chemokine receptor activity
GO:0020037 heme binding
GO:0046872 metal ion binding
Biological Process
GO:0002685 regulation of leukocyte migration
GO:0006935 chemotaxis
GO:0006954 inflammatory response
GO:0007186 G protein-coupled receptor signaling pathway
GO:0022900 electron transport chain
Cellular Component
GO:0016020 membrane
GO:0042597 periplasmic space

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8k2w, PDBe:8k2w, PDBj:8k2w
PDBsum8k2w
PubMed38012179
UniProtP0ABE7|C562_ECOLX Soluble cytochrome b562 (Gene Name=cybC);
P41145|OPRK_HUMAN Kappa-type opioid receptor (Gene Name=OPRK1);
P49682

[Back to BioLiP]