Structure of PDB 7pir Chain R Binding Site BS01

Receptor Information
>7pir Chain R (length=84) Species: 272634 (Mycoplasmoides pneumoniae M129) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RSAKKGAFVDAHLLKKVIDMNKQEKKRPIKTWSRRSTIFPEFVGNTFAVH
NGKTFINVYVTDDMVGHKLGEFSPTRNFKQHTAN
Ligand information
>7pir Chain 5 (length=1493) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ucugagaguuugauccuggcucaggauuaacgcuggcggcaugccuaaua
caugcaagucgaucgaaaguaguaauacuuuagaggcgaacgggugagua
acacguauccaaucuaccuuauaaugggggauaacuaguugaaagacuag
cuaauaccgcauaagaacuuugguucgaaucaaaguugaaaggaccugca
aggguucguuauuugaugagggugcgccauaucagcuaguugguggggua
acggccuaccaaggcaaugacguguagcuaugcugagaaguagaauagcc
acaaugggacugagacacggcccauacuccuacgggaggcagcaguaggg
aauuuuucacaaugagcgaaagcuugauggagcaaugccgcgugaacgau
gaaggucuuuaagauuguaaaguucuuuuauuugggaagaaugacuuuag
cagguaauggcuagaguuugacuguaccauuuugaauaagugacgacuaa
cuaugugccagcagucgcgguaauacauaggucgcaagcguuauccggau
uuauugggcguaaagcaagcgcaggcggauugaaaagucugguguuaaag
gcagcugcuuaacaguuguaugcauuggaaacuauuaaucuagagugugg
uagggaguuuuggaauuucauguggagcggugaaaugcguagauauauga
aggaacaccaguggcgaaggcgaaaacuuaggccauuacugacgcuuagg
cuugaaaguguggggagcaaauaggauuagauacccuaguaguccacacc
guaaacgauagauacuagcugucggggcgauccccucgguagugaaguua
acacauuaaguaucucgccuggguaguacauucgcaagaaugaaacucaa
acggaauugacggggacccgcacaagugguggagcauguugcuuaauucg
acgguacacgaaaaaccuuaccuagacuugacauccuuggcaaaguuaug
gaaacauaaugccgagugacagguggugcaugguugucgucagcucgugu
cgugagauguuggguuaagucccgcaacgagcgcaacccuuaucguuagu
uacauugucuagcgagacugcuaaugcaaauuggaggaaggaagggauga
cgucaaaucaucaugccccuuaugucuagggcugcaaacgugcuacaaug
gccaauacaaacagucgccagcuuguaaaagugagcaaaucuguaaaguu
ggucucaguucggauugagggcugcaauucguccucaugaagucggaauc
acuaguaaucgcgaaucagcuaugucgcggugaauacguucucgggucuu
guacacaccgcccgucaaacuaugaaagcugguaauauuuaaaaacgugu
ugcuaaccauuaggaagcgcaugucaaggauagcaccggugauuggaguu
aagucguaacaagguaccccuacgagaacguggggguggauca
.....<<<<..[.(((..>>>>..<<<.<<<<<...<<<<<<........
........<<..<<.<<<<<<....>>>>>>.>>>>.......<<.....
...<.<.<<<..<<........<<.<.<<.....<<<<<<....>>>>>>
......>>.>.....<<<<.............>.>>>....<<<<<<...
.>>>>>>.>>.......>>>>>.>.>.<<.....<<<..<<<<<<<<...
....>>>>>>>>>>>.......>>..<<<<<<<<....>>>...>>>>>.
>>.<<<<<............>>>>>.<<<<....>>>>............
......<<<....<<<<....>>>>..>>>...>.>>>>>...<<<<...
....<<<.....>>>......>>>>...<..<.<<........<<<<<<<
..........>>>>>>>.........>>>....>.....<<<<<(((...
<<<<<.....<<.)))>>.......>>>>>>>>>>..>>>>>>>>.....
......<<<(......<<<<...<<<.<<<<<<..<<<<<.<<<<.....
<<<<<<<.....>>>>>>>..>>>>.>>>..>>.>>>>>>...<<<.<<<
<...<<<<<<<....<<<<<<<<<..<<........>>.....>>>>>>>
>>...........<<....>>.>>>>>>>..>>>>..>>>...>>>...>
>>>....<<<<<<<.......<<<<.........>>>>....>>>>>>>.
.........<<<<<<..<<<<<<<<<<......>>>>>>>>>>...<<..
.)>>.....>>>>>>.>>>.<<<.......<<<....>>>.....>>>..
..))).]<<.<<.<<<<<<<.....<<<....<<<<<<<<<<......<<
........>>..........<<<<<<.........<<<<<....<<<.<<
....>>.>>>.>>>>>....<<<.<<<..<<<<<<.......<<<<<<<<
<....>>>..<<<<......>>>>..>>>>>>.....<<<<.<<<<<<<.
........>>>>>>>.....<<<<<....>>>>>........>>>>....
.....>>...>>>>>>>>>>....>>>>>>...>>.>>>>>>>>.....<
<<<<<......<<<..<<..<<<<....>>>>..>>....>>>.....>>
>>>>......<....<<<<<<<........>>>>>>>....>.......>
>>.....<<<<<<<..........>>>>>>>...........>>>>>>>>
>..>>....<..<<.<.<<<<.<....<<<<<<..<<<<.....<<<<<<
.<<<..<<....>>.>>>>>>>>>...>.>>>..>>>>>>....>.>>>>
..>.>>...>.....<<<<<<<<<....>>>>>>>>>......
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7pir Visualizing translation dynamics at atomic detail inside a bacterial cell.
Resolution12.1 Å
Binding residue
(original residue number in PDB)		R3 S4 A5 K6 F10 D12 H14 L15 K17 K18 K32 T33 W34 R36 R37 H52 N53 G54 K55 T56 F57 K70 G72 E73 T77 R78 N79 K81 Q82 T84 A85 N86
Binding residue
(residue number reindexed from 1)		R1 S2 A3 K4 F8 D10 H12 L13 K15 K16 K30 T31 W32 R34 R35 H50 N51 G52 K53 T54 F55 K68 G70 E71 T75 R76 N77 K79 Q80 T82 A83 N84
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0000028 ribosomal small subunit assembly
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:7pir, PDBe:7pir, PDBj:7pir
PDBsum7pir
PubMed36171285
UniProtP75576|RS19_MYCPN Small ribosomal subunit protein uS19 (Gene Name=rpsS)

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