Structure of PDB 7phc Chain R Binding Site BS01

Receptor Information
>7phc Chain R (length=84) Species: 272634 (Mycoplasmoides pneumoniae M129) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RSAKKGAFVDAHLLKKVIDMNKQEKKRPIKTWSRRSTIFPEFVGNTFAVH
NGKTFINVYVTDDMVGHKLGEFSPTRNFKQHTAN
Ligand information
>7phc Chain 5 (length=1493) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ucugagaguuugauccuggcucaggauuaacgcuggcggcaugccuaaua
caugcaagucgaucgaaaguaguaauacuuuagaggcgaacgggugagua
acacguauccaaucuaccuuauaaugggggauaacuaguugaaagacuag
cuaauaccgcauaagaacuuugguucgaaucaaaguugaaaggaccugca
aggguucguuauuugaugagggugcgccauaucagcuaguugguggggua
acggccuaccaaggcaaugacguguagcuaugcugagaaguagaauagcc
acaaugggacugagacacggcccauacuccuacgggaggcagcaguaggg
aauuuuucacaaugagcgaaagcuugauggagcaaugccgcgugaacgau
gaaggucuuuaagauuguaaaguucuuuuauuugggaagaaugacuuuag
cagguaauggcuagaguuugacuguaccauuuugaauaagugacgacuaa
cuaugugccagcagucgcgguaauacauaggucgcaagcguuauccggau
uuauugggcguaaagcaagcgcaggcggauugaaaagucugguguuaaag
gcagcugcuuaacaguuguaugcauuggaaacuauuaaucuagagugugg
uagggaguuuuggaauuucauguggagcggugaaaugcguagauauauga
aggaacaccaguggcgaaggcgaaaacuuaggccauuacugacgcuuagg
cuugaaaguguggggagcaaauaggauuagauacccuaguaguccacacc
guaaacgauagauacuagcugucggggcgauccccucgguagugaaguua
acacauuaaguaucucgccuggguaguacauucgcaagaaugaaacucaa
acggaauugacggggacccgcacaagugguggagcauguugcuuaauucg
acgguacacgaaaaaccuuaccuagacuugacauccuuggcaaaguuaug
gaaacauaaugccgagugacagguggugcaugguugucgucagcucgugu
cgugagauguuggguuaagucccgcaacgagcgcaacccuuaucguuagu
uacauugucuagcgagacugcuaaugcaaauuggaggaaggaagggauga
cgucaaaucaucaugccccuuaugucuagggcugcaaacgugcuacaaug
gccaauacaaacagucgccagcuuguaaaagugagcaaaucuguaaaguu
ggucucaguucggauugagggcugcaauucguccucaugaagucggaauc
acuaguaaucgcgaaucagcuaugucgcggugaauacguucucgggucuu
guacacaccgcccgucaaacuaugaaagcugguaauauuuaaaaacgugu
ugcuaaccauuaggaagcgcaugucaaggauagcaccggugauuggaguu
aagucguaacaagguaccccuacgagaacguggggguggauca
.....<<<<..[.(((..>>>>.<<<<.<<<<....<<.<<<<..<..<<
..<<<..<<<..<<.<<<<<<....>>>>>>.>>>>>......<<.....
.....<.<<<..<<......<<<<<<.<<.....<<<<<<....>>>>>>
......>>.>.....<<<<<<..<<.>>...>>>>>>....<<<<<<...
.>>>>>>>>>>>.....>>>>>.>...<<<....<<<..<<<<<<<<...
....>>>>>>>>>>>......>>>..<<<<<<<<....>>>...>>>>>.
>>.<<<<<............>>>>>.<<<<....>>>>...>>>.>>>..
...<..<<<...<<<<<....>>>>.>>>>.>>>.>>.>>...<<<<...
....<<<.....>>>......>>>>...<....<<.......<<<<<<<<
<........>>>>>>>>>........>>.....>.....<<<<<(((...
<<<<<.....<<.)))>>.......>>>>>>>>>>...>>>>>>>>....
......<<<((.....<<<<....<<.<<<<<<..<<<<<.<<<<.....
<<<<<<<.....>>>>>>>..>>>>.>>>..>>.>>>>>>...<<<.<<<
<...<<<<<<<....<<<<<<<<<..<<........>>.....>>>>>>>
>>...........<<....>>.>>>>>>>..>>>>..>>>...>>....>
>>>....<<<<<<....<...<<<<.........>>>>...>.>>>>>>.
.........<<<<.<..<<<<<<<<<<......>>>>>>>>>>...<<..
))>>.....>.>>>>.>>>.<<<......<<<<....>>>>....>>>..
..))).]<<<<<.<<<<<<<.<<..<<<<...<<<<<<<<<<......<<
........>>..........<<<<<<.........<..<.....<<<<<<
....>>>>>>..>..>.....<<.<<<...<<<<<<.<....<<<<<<<<
<....>>>..<<<<......>>>>..>>>>>>.....<<<<.<<<<<.<.
.........>>>>>>......<<........>>.........>>>>....
.>.>.>>>...>>.>>>>>.....>>>>>>...>>.>>>>>>>>.....<
<<<<<......<<<..<<..<<<<....>>>>..>>....>>>.....>>
>>>>...........<<<<<<<........>>>>>>>...........>>
>>.....<<<<<<<..........>>>>>>>......>>...>>>>>>>>
>>.>>.......<<.<.<<<<.<<...<<<<<<..<<<<.....<<<<<<
.<<<..<<....>>.>>>>>>>>>....>>>>..>>>>>>...>>.>>>>
..>.>>.........<<<<<<<<<....>>>>>>>>>......
Receptor-Ligand Complex Structure
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PDB7phc Visualizing translation dynamics at atomic detail inside a bacterial cell.
Resolution9.9 Å
Binding residue
(original residue number in PDB)		R3 S4 A5 K6 F10 D12 A13 H14 K17 K18 W34 S35 R36 R37 H52 N53 G54 K55 F57 K70 G72 E73 T77 R78 N79 F80 K81 Q82 N86
Binding residue
(residue number reindexed from 1)		R1 S2 A3 K4 F8 D10 A11 H12 K15 K16 W32 S33 R34 R35 H50 N51 G52 K53 F55 K68 G70 E71 T75 R76 N77 F78 K79 Q80 N84
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0000028 ribosomal small subunit assembly
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:7phc, PDBe:7phc, PDBj:7phc
PDBsum7phc
PubMed36171285
UniProtP75576|RS19_MYCPN Small ribosomal subunit protein uS19 (Gene Name=rpsS)

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