Structure of PDB 6r87 Chain R Binding Site BS01

Receptor Information
>6r87 Chain R (length=355) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LKKNDLYIFDLSEQLLNSLKLMSCSVCQMSHYQTDYHLMNVKRNLRAAAA
AAAAAAAAAAAAAAAAAAAAAAAAASPYIYFKSKYVLAIYKSLFNKRSLS
NPNEALTFWNSQENPMAISALFMVGGGHFAGAIVSHQRLNETLIEQAVNF
LEHKTFHRYTSALRRYNESALKTDIQGVLKDWEPYLSKCDNIFIRARNVS
DKKIFTDNTVLNKGDERIKSFPFTTNRPTVLELKKAWCELSYLKILPKEI
ISLLKKGRAPLLISFLKKNKLDGNFRLKPESKYSLTPTMLHYASQQGMKQ
MALILLSNIKCDPTIKNRLGRTAWDLNRNDDVRHAFQIARYNLGAAAAAA
AAAAA
Ligand information
>6r87 Chain B (length=76) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
gggcguguggcguagucgguagcgcgcucccuuagcaugggagaggucuc
cgguucgauuccggacucguccgcca
<<<<<....<<<<........>>>>.<<<<<.......>>>>>.....<<
<<<.......>>>>>..>>>>>....
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6r87 Structure and function of Vms1 and Arb1 in RQC and mitochondrial proteome homeostasis.
Resolution3.4 Å
Binding residue
(original residue number in PDB)		H279 K280 R284 Y285 T286 R313 V379
Binding residue
(residue number reindexed from 1)		H153 K154 R158 Y159 T160 R164 V230
Enzymatic activity
Enzyme Commision number 3.1.-.-
External links
PDB RCSB:6r87, PDBe:6r87, PDBj:6r87
PDBsum6r87
PubMed31189955
UniProtQ04311|VMS1_YEAST tRNA endonuclease VMS1 (Gene Name=VMS1)

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