Structure of PDB 2y0s Chain R Binding Site BS01

Receptor Information
>2y0s Chain R (length=1085) Species: 2286 (Saccharolobus shibatae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LSIDERWKVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEIPTEIP
GLKVRLGKIRIGKPRVRESDRGEREISPMEARLRNLTYAAPLWLTMIPVE
NNIEAEPEEVYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIV
NGSERVIVTQEDLAPNRVLVDTGKTGSNITHTAKIISSTVTIERLKDGTF
HVSFPAVPGKIPFVILMRALGILTDRDIVYAVSLDPEIQNELFPSLEQAS
SIANVDDALDFIGSRVAIGQKRENRIEKAQQIIDKYFLPHLGTSADDRRK
KAYYLAYAISKVIELYLGRREPDDKDHYANKRLRLAGDLFASLFRVAFKA
FVKDLTYQLEKSKVRGRKLALKALVRPDIVTERIRHALATGNWVGGRTGV
SQLLDRTNWLSMLSHLRRVISSLARGQPNFEARDLHGTQWGRMCPFETPE
GPNSGLVKNLALMAQIAVGINEKIVEKTLYEMGVVPVEEVIRRVKWSKVI
LNGRLVGYYRDGEELAKKIRERRRKGEISDEVNVGHIVTDFINEVHVNCD
SGRVRRPLIIVSNGNPLVTREDIEKLDSGSITFDDLVRQGKIEYLDAEEE
ENAYVALEPSDLTPEHTHLEIWSPAILGITASIIPYPEHNQSPRNTYQSA
MAKQALGLYAANYQLRTDTRAHLLHYPQRPLVQTRALDIIGYTNRPAGNN
AILAVISFTGYNMEDSIIMNRSSVERGMYRSTFFRLYSTEEVKYPGGQED
KIVMPEPGVRGYKGKEYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPAKRD
TSIVTRHGEMGIVDLVLITETAEGNKLVKVRVRDLRIPSIGDKFASRHGQ
KGVIGMLIPQVDMPYTVKGVVPDVILNPHALPSRMTLGQIMEGIAGKYAA
LSGNIVDATPFYKTPIEQLQNEILKYGYLPDATEVTYDGRTGQKIKSRIY
FGVVYYQKLHHMVADKIHARARGPVQILTRQPTEGRAREGGLRFGEMERD
CLIGFGTAMLLKDRLLDNSDRTTIYVCDQCGYIGWYDKNKNKYVCPIHGD
KSNLFPVTVSYAFKLLIQELMSMIISPRLILEDRV
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain2y0s Chain R Residue 2123 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB2y0s Archaeal RNA polymerase: the influence of the protruding stalk in crystal packing and preliminary biophysical analysis of the Rpo13 subunit.
Resolution3.8 Å
Binding residue
(original residue number in PDB)		C1067 I1084
Binding residue
(residue number reindexed from 1)		C1030 I1047
Annotation score1
Enzymatic activity
Enzyme Commision number 2.7.7.6: DNA-directed RNA polymerase.
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003899 DNA-directed 5'-3' RNA polymerase activity
GO:0008270 zinc ion binding
GO:0016779 nucleotidyltransferase activity
GO:0032549 ribonucleoside binding
GO:0034062 5'-3' RNA polymerase activity
GO:0046872 metal ion binding
Biological Process
GO:0006351 DNA-templated transcription
Cellular Component
GO:0000428 DNA-directed RNA polymerase complex
GO:0005737 cytoplasm

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:2y0s, PDBe:2y0s, PDBj:2y0s
PDBsum2y0s
PubMed21265742
UniProtB8YB55|RPO2_SACSH DNA-directed RNA polymerase subunit Rpo2 (Gene Name=rpo2)

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