Structure of PDB 2df7 Chain R Binding Site BS01

Receptor Information

>2df7 Chain R (length=411) Species: 10995 (Infectious bursal disease virus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

VPFIRSLLMPTTGPASIPDDTLEKHTLRSETSTYNLTVGDTGSGLIVFFP
GFPGSIVGAHYTLQSNGNYKFDQMLLTAQNLPASYNYCRLVSRSLTVRSS
TLPLNGTINAVTFQGSLSELTDVSYNGLMSATANINDKIGNVLVGEGVTV
LSLPTSYDLGYVRLGDPIPAIGLDPKMVATCDSSDRPRVYTITAADDYQF
SSQYQSGGVTITLFSANIDAITSLSIGGELVFHTSVHGLALDATIYLIGF
DGTTVITRAVASDNGLTTGIDNLMPFNLVIPTNEITQPITSIKLEIVTSK
SGGQAGDQMSWSASGSLAVTIHGGNYPGALRPVTLVAYERVATGSVVTVA
GVSNFELIPNPELAKNLVTEYGRFDPGAMNYTKLILSERERLGIKTVWPT
REYTDFREYFM

Ligand information

Ligand ID

InChI

InChI=1S/Ca/q+2

InChIKey

BHPQYMZQTOCNFJ-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.341	[Ca++]
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Ca+2]

Formula

Name

CALCIUM ION

PDB chain

2df7 Chain R Residue 5908 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	2df7 Crystal structure of infectious bursal disease virus VP2 subviral particle at 2.6A resolution: Implications in virion assembly and immunogenicity.
Resolution	2.6 Å
Binding residue (original residue number in PDB)	D31 D174
Binding residue (residue number reindexed from 1)	D20 D158
Annotation score	4

Enzymatic activity

Enzyme Commision number

3.4.21.-

Gene Ontology

	Molecular Function
GO:0005198	structural molecule activity

View graph for
Molecular Function

External links

PDB	RCSB:2df7, PDBe:2df7, PDBj:2df7
PDBsum	2df7
PubMed	16677827
UniProt	Q9WR38

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