Structure of PDB 8rdw Chain Qb Binding Site BS01

Receptor Information
>8rdw Chain Qb (length=103) Species: 45610 (Psychrobacter urativorans) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MYAVIKTGGKQHRVVVDELLKVELLKAEQGETITFNDVLMVVDGETVKIG
QPVVDGASVEVEVIEHGRGEKIRIVKHNRRKHYHKEQGHRQWYTLLKIKA
INA
Ligand information
>8rdw Chain Z2 (length=2729) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
gucaaguaaugaagcgcacaugguggaugccuuggcagucagaggcgaug
aaagacgugacagccugcgauaagcuucggggaggcggcaauauccugug
auccggagauuucugaauggggaaacccacuuaccauaagguagguaucu
uguacaagaagcgaacgaggggaagugaaacaucucaguacccuuaggaa
aagacaucaaaugagauuccccaaguagcggcgagcgaacggggagaagc
cgauuaaugcuaauguagaagaacagcgugggaaagcugaccguaguagg
ugauaguccuguauucgaaacauuagcguuaacauauuaaguagggcggg
acacgagaaauccugucugaagauggggggaccauccuccaaggcuaaau
acuccugacugaccgauagugaaccaguaccgugagggaaaggcgaaaag
aaccccugugaggggagugaaauagaaccugaaaccgugugcguacaagc
aguaggagccucaauuuauuggggugacugcguaccuuuuguauaauggg
ucagcgacuuauauucuguagcaagguuaaccguuuaggggagccguagg
gaaaccgagucuuaauagggcgucuaguugcaggguauagacccgaaacc
gagugaucuauccaugagcagguugaaagugccguaacaggcaccggagg
accgaacccacugucguugaaaagccaggggaugacuuguggauaggggu
gaaaggcuaaucaaacucggugauagcugguucuccccgaaagcuauuua
gguagcgccucggacgaauaccauuggggguagagcacuguuucggcuag
ggggucauaccgacuaaccgaugcaaacuccgaauaccgaugaguaauau
ccgggagacacacggcgggugcuaacguccgucguggagagggaaacaac
ccagaccgccagcuaaggccccaaauuccuaguuaagugggaaacgaggu
gggaaggcauagacagcuaggagguuggcuuagaagcagccauccuuuaa
agaaagcguaauagcucacuagucgagucggccugcgcggaagauguaac
ggggcucaaacuaggagccgaagcugcggauuugaaacuuguuuucaagu
gguaggggagcguuguguaagccugugaaggugugucguaaggcaugcug
gagguaucacaagagcgaaugcugacgugaguaacgauaaugcgagugaa
aagcucgcacgccggaagaucaaggguuccaguccaacguuaaucggggc
ugggugagucgaccccuaaggcgaggccgaaaggcguagucgaugggaaa
uugguuaauauuccaauacuuguuuauagugcgauggagggacggagaag
guuaugucagccuggcguugguuguccaggugaaaggauguaggcuuaca
guuuaggcaaauccggacuguaggcugagaucugauagcaaggaaguggc
aaauaccaugcuuccaggaaaagcuucuaaggcuauaaacgaaucguacc
cuaaaccgacacaggugaucagguagagaauaccaaggcgcuugagagaa
cucugcugaaggaacuaggcaaaaugguaccguaacuucgggagaaggua
cgcuguugauggugauaggucuccuugagcuuucgacagucgcagauacc
aggcugcugcaacuguuuauuaaaaacacagcacucugcaaacacgaaag
uggacguauagggugugaugccugcccggugcuggaagguuaauugaugg
gguuagcguaagcgaagcucuugaucgaagccccaguaaacggcggccgu
aacuauaacgguccuaagguagcgaaauuccuugucagguaaguucugac
cugcacgaauggcauaaugauggcagcgcugucuccagcagagacucagu
gaaaucgaaaucgcagugaagaugcuguguacccgcggcuagacggaaag
accccgugaaccuuuacuacagcuuuacauugaacuuggguucuaacuca
gguauaacaauaccgaggacaauguaugguggguaguuugacuggggcgg
ucuccuccuaaagaguaacggaggaguacgaaggugcgcucagaacgguc
ggaaaucguucauagaguauaaaggcaaaagcgcgcuuaacugcgagacc
cacaagucgagcagguacgaaaguaggucuuagugauccggugguucugu
auggaagggccaucgcucaacggauaaaagguacucuggggauaacaggc
ugauaccgcccaagaguucauaucgacggcgguguuuggcaccucgaugu
cggcucaucucauccuagggcugaagcagguccuaaggguauggcuguuc
gccauuuaaagagguacgcgagcuggguuuagaacgucgugagacaguuc
ggucccuaucuaccgugggcguuggaaauuugagaggaucugcuccuagu
acgagaggaccagaguggacgaaccucugguguucggguugucacgccag
uggcauugcccgguagcuacguucggaugggauaaccgcugaaagcaucu
aagcgggaagcccaccucaagauuagauuucccuaaagagccguugaaga
cuacgacguugauaggcaggguguggaagugcagcgaugcauguagcuaa
ccuguacuaauugcucguuuggcuugacc
<<<<<<<......<<<<<<<<<<<.....<<.<<<<<<<<<<<<<<....
..<<<<<<.[..(((.>>>.....<<<<<<<..<<.)))..]..>>....
.>>>>>>>...>>>....<<<....>>><<<<<<<....>>>>>>>.<<<
<<..>>>>>.>>...<<<<<<.....<<....>>......>>>>>.>...
......<<....>>..<<<<<<.....<<.....>>....>>>>>>..<<
<..<<<<<<<<<<<<<.<<<...<<<<........>>>>((......<<<
.....))>>>...>>>...>>>>>>>>>>>>>...........<<<<<<<
<.........>>>>>>>>......<<<<<..((((>>>>>..>>>.....
.>>.>>>>>>>.>>>..............<<....>>....>>.......
..<<<<.....>>>>..................>>>>>>>>>>>......
.<<<<..<<<<<<<....>>>>>>>..>>>>...<.<........>.>.<
<<<<<....<<<<<<<<<<<<<..<<<...<<.....>>...>>>...<<
....>>..<<<<.....>>>>.....>>>>>>>>>>>>>..<<.<..<<<
<<<<.....<<<<<<<<<..<<<<....<<<<<......>>>>>..>...
>>>...<<<.<<<.<........>.>>>>>>....>>>>>>>>>...<<<
.....>>>......>>>>>>...>..>.>>..<<<<<<....<<<<<...
.>>>>>.<<<<<<<....<<<<<<<<<.....<<<...<<<.<<<<....
.<<..........>>..>>>>.>>>..>>.>.....>>>>>>.>>>...>
>>>>>.>...<<<<<<<<<<......>>>>>>>>>>....<<<......>
>>...<<<<.<<<...<<<(((.....<<<<<<...........<<..<<
<<<..<<........<<<<<.<<<..<<<<.......>>>>..>>>....
....<<<......>>>..>>>>>....>>..>>>>>.>>...........
)))......>>>>>>.>>>...>>>>>>><<<<<<.<.....>.>>>>>>
....>>>>>>..<<<<<...<<<......<<<<<<<<....>>>>>>>>.
..>>>..>>>>>........>>>>>><......<<.....<<<<<<....
...>>>>>><<<<....<<<<<.<<...<<<<<<...<<.....>>.>>>
>>>....((<<<.<<<...<<<...<<<....>>>...>>>...>>>..<
<<<<........>>>>>))<<<<<<<<<<<.<...<<<<....<<<<..<
<<..<<<<<<<<<<<...[[[[...>>>>>>....<<<<...<<<<<<<<
<<<..<<.....>>.>>>>>>>>>>>...>>>>.............>>>>
>...>>>...>>>>.........>>>>...>>>>>>>>>>>>.>>>..>>
.....<<......>>>>>>>.<<<<.....>>>>..>>>>..<<<<....
<<<<<<<<.<<...............<<<<<...............>>>>
><<<<<<<<.<<<...<<<...>>>...>>>.>>>>>>>>..........
..<<<<<<<<<..<<<.........>>>..<<<<<<<.....<<<....>
>>.......>>>>>>>.<<<<<.<<<..<<<<<<<..<<<....<...<<
<<<<.<<....>>..>>>>>>..>.....>>>>>>>>..>>>>><<<<<<
.......>>>>>>........<...........<<<<<<.....>>>>>>
.....>....>>>>>..>>.>>>>>>>.....>>.>>>>>>>>.>>>>>>
.....>.....<<<<<........>>>>>..<<<<<<<.<<<<.<<....
..<<<<.<<<<<<..<<<<<.<<<.<<<<<.<<<<<..>>>>>...<<<.
<<<<<....>>>>>>>>....>>>>>.>>>..>>>>>..<<<<.....>>
>><<<<<<...........>>>>>>..<<...<<<<<<<...<<<<<<..
.....>>>>>>.....<<.[.(((>>....>>>>>>>...<<<<..<<<.
.....>>>..>>>>.<<<....>>>.>>)))]......<<<<<<<.<<..
))))..>>>>>>>>>.............>>>>..>>>>>>.......<<<
<...<<<<<<...<<.......>>...>>>>>>....>>>.>.......<
<<<<.<<<<<<..<<<<<<<<<......>>>>>>..>>>.<<<<<.....
>>>>>.....>>>>>..>...>>>.>>....<<<<<<<....>>>.>>>>
....>>..>>>>>>>>>>>....<<<<<<<...<<<<..<<<<<<.....
............>>>>>>.<<<<<...<<<<...<<<<<<<<<<<]]]]>
>>>>>..>>>>>...>>>>.>>>>>...<<<....<<<<<..........
.>>>>>....>>>.>>>>.......>>>>>>>.....<<<<<<<<<....
...>>>>>....<<<<<<<<..<<....<<<<<....>>>>>...>>...
>>>>>.>>>...>>>>.....>>>>>>>.
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8rdw A new family of bacterial ribosome hibernation factors
Resolution2.74 Å
Binding residue
(original residue number in PDB)
G8 G9 K10 E23 L24 R68 K71 I74 K76 H77 R79 R80 K81 Y83 K85 E86 Q87 G88 H89 R90 Q91
Binding residue
(residue number reindexed from 1)
G8 G9 K10 E23 L24 R68 K71 I74 K76 H77 R79 R80 K81 Y83 K85 E86 Q87 G88 H89 R90 Q91
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function

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Biological Process

View graph for
Cellular Component
External links
PDB RCSB:8rdw, PDBe:8rdw, PDBj:8rdw
PDBsum8rdw
PubMed38355796
UniProtA0A0M5TIS3

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