Structure of PDB 8pkp Chain Q Binding Site BS01

Receptor Information
>8pkp Chain Q (length=504) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
NLERLRKRVRQYLDQQQYQSALFWADKVASLSREEPQDIYWLAQCLYLTA
QYHRAAHALRSRKLDKLYEACRYLAARCHYAAKEHQQALDVLDMSQSSIK
SSICLLRGKIYDALDNRTLATYSYKEALKLDVYCFEAFDLLTSHHMLTAQ
EEKELLESLPLSKLCNEEQELLRFLFENKLKKYNKPSETVIPESVDGLQE
NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELN
KANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL
EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYG
LTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDAL
EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNA
STYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGD
SEAY
Ligand information
>8pkp Chain G (length=27) Species: 9606 (Homo sapiens) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
MLRRKPTRLELKLDDIEEFENIRKDLE
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8pkp High-resolution structure of the Anaphase-promoting complex (APC/C) bound to co-activator Cdh1
Resolution3.2 Å
Binding residue
(original residue number in PDB)		H174 Y242 V276 E277 H342 A345 Y373 F403 H406 E407 F413 K443 E445 P446 N449 N450 H453 R456 K457 S480 Y487 L491 F514 M525
Binding residue
(residue number reindexed from 1)		H145 Y213 V247 E248 H313 A316 Y344 F374 H377 E378 F384 K414 E416 P417 N420 N421 H424 R427 K428 S451 Y458 L462 F485 M496
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005515 protein binding
Biological Process
GO:0007346 regulation of mitotic cell cycle
GO:0016567 protein ubiquitination
GO:0031145 anaphase-promoting complex-dependent catabolic process
GO:0045842 positive regulation of mitotic metaphase/anaphase transition
GO:0051301 cell division
GO:0051445 regulation of meiotic cell cycle
GO:0070936 protein K48-linked ubiquitination
GO:0070979 protein K11-linked ubiquitination
GO:0141198 protein branched polyubiquitination
Cellular Component
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005680 anaphase-promoting complex
GO:0005737 cytoplasm
GO:0005813 centrosome
GO:0005819 spindle
GO:0005829 cytosol
GO:0005856 cytoskeleton
GO:0072686 mitotic spindle

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8pkp, PDBe:8pkp, PDBj:8pkp
PDBsum8pkp
PubMed
UniProtQ13042|CDC16_HUMAN Cell division cycle protein 16 homolog (Gene Name=CDC16)

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