Structure of PDB 7asn Chain Q Binding Site BS01

Receptor Information
>7asn Chain Q (length=112) Species: 1280 (Staphylococcus aureus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MEAKAVARTIRIAPRKVRLVLDLIRGKNAAEAIAILKLTNKASSPVIEKV
LMSALANAEHNYDMNTDELVVKEAYANEGPTLKRFRPRAQGRASAINKRT
SHITIVVSDGKE
Ligand information
>7asn Chain A (length=2742) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uuaaguuauuaagggcgcacgguggaugccuuggcacuagaagccgauga
aggacguuacuaacgacgauaugcuuuggggagcuguaaguaagcuuuga
uccagagauuuccgaauggggaaacccagcaugaguuaugucauguuauc
gauaugugaauacauagcauaucagaaggcacacccggagaacugaaaca
ucuuaguacccggaggaagagaaagaaaauucgauucccuuaguagcggc
gagcgaaacgggaagagcccaaaccaacaagcuugcuuguugggguugua
ggacacucuacggaguuacaaaggacgacauuagacgaaucaucuggaaa
gaugaaucaaagaagguaauaauccuguagucgaaaauguugucucucuu
gaguggauccugaguacgacggagcacgugaaauuccgucggaaucuggg
aggaccaucuccuaaggcuaaauacucucuagugaccgauagugaaccag
uaccgugagggaaaggugaaaagcaccccggaaggggagugaaauagaac
cugaaaccgugugcuuacaaguagucagagcccguuaaugggugauggcg
ugccuuuuguagaaugaaccggcgaguuacgauuugaugcaagguuaagc
aguaaauguggagccguagcgaaagcgagucuagggcguuuaguauuugg
ucguagacccgaaaccaggugaucuacccuuggucagguugaaguucagg
cugaauggaggaccgaaccgacuuacguugaaaagugagcggaugaacug
aggguagcggagaaauuccaaucgaaccuggagauagcugguucucuccg
aaauagcuuuagggcuagccucaagugaugauuauuggagguagagcacu
guuuggacgaggggccgguuaccgaauucagacaaacuccgaaugccaau
uaauuuaacuugggagucagaacaugggugauaagguccguguucgaaag
ggaaacagcccagaccaccagcuaaggucccaaaauauauguuaagugga
uguggcguugcccagacaacgucgagugacacugcgccgaaaauguaccg
gggcuaaacauauuaccgaagcuguggauuguccuuuggacaaugguagg
agagcguucuaagggcguugaagcaugaucguaaggacauguggagcgcu
uagaagugagaaugccggugugaguagcgaaagacgggugagaaucccgu
ccaccgauugacuaagguuuccagaggaaggcucguccgcucuggguuag
ucggguccuaagcugaggccgacaggcguaggcgauggauaacagguuga
uauuccuguaccaccuauaaucguuuuaaucgauggggggacgcaguagg
auaggcgaagcgugcgauuggauugcacgugauuucacacugccgagaaa
agccucuagauagaaaauaggugcccguaccgcaaaccgacacagguagu
caagaugagaauucuaaggugagcgagcgaacucucguuaaggaacucgg
caaaaugaccccguaacuucgggagaaggggugcucuuuaggguuaacgc
ccagaagagccgcagugaauaggcccaagcgacuguuuaucaaaaacaca
ggucucugcuaaaccguaaggugauguauaggggcugacgccgcccggug
cuggaagguuaagaggagugguuagcuucugcgaagcuacgaaucgaagc
cccaguaaacggcggccguauaacgguccuaagguagcgaaauuccuugu
cggguaaguuccgacccgcacgaaaggcguaacgauuugggcacugucuc
aacgagagacucggugaaaucauaguaccugugaagaugcagguuacccg
cgacaggacggaaagaccccguggagcuuuacuguagccugauauugaaa
uucggcacgcuuguacaggauagguaggagccuuugaaacgugagcgcua
gcuuacguggaggcgcuggugggauacuacccagcuguguuggcuuucua
acccgcaccacuuaucguggugggagacagugucaggcgggcaguuugac
uggggcggucgccuccuaaaagguaacggaggcgcucaaagguucccuca
gaaugguuggaaaucauucauagaguguaaaggcauaagggagcuugacu
gcgagaccuacaagucgagcagggucgaaagacggacuuagugauccggu
gguuccgcauggaagggccaucgcucaacggauaaaagcuaccccgggga
uaacaggcuuaucucccccaagaguucacaucgacggggagguuuggcac
cucgaugucggcucaucgcauccuggggcuguagucggucccaaggguug
ggcuguucgcccauuaaagcgguacgcgagcuggguucagaacgucguga
gacaguucggucccuauccgucgugggcguaggaaauuugagaggagcug
uccuuaguacgagaggaccgggauggacauaccucugguguaccaguugu
cgugccaacggcauagcuggguagcuauguguggacgggauaagugcuga
aagcaucuaagcaugagccccccucaagaugagauuucccaacuucgguu
auaagaucccucaaagaugaugagguuaauagguucgagguggaagcaug
gugacauguggagcugacgaauacuaaucgaucgaacuuaau
<<<.........<<<<<<<<<<<....{[[..[[<<<<<<<[[.<.....
.<<<<<<.((..((.>>>.....<<<<<<<..<<<))..)).>>>.....
>>>>>>>...>>>....<<<....>>><<<<<<<......>>>>>>>.<<
<<<<<<<.........>>>>>>>.>>.>.....<<<<<......<.....
.>.......>>>>.>.........<<....>>..<<<<<......<<...
..>>.....>>>>>..(((.....<.<...<....>....>.>......<
<<.<<<<<...<<<<.........<.<<<<<<.<<<...<<<<<......
>>>>>((......<<<.....))>>>...>>>...>>>>>>.>..>>>>.
>>>>>...>>>.....<<<<<<<<.........>>>>>>>>......<<<
<<..<<<<>>>>>..)))......]].>>>>>>>.]].............
..<<....>>....]].........<<<<....>>>>.............
}....>>>>>>>>>>>.......<<<<..<<<<......>>>>..>>>>.
..<.<........>.>.<<<<<<....<<<<<<<.<<<<<..<<<...<<
<.....>>>...>>>...<<....>>..<<<<.>>>>.....>>>>>.>>
>>>>>..<<.<...<<<<<<.....<<<<<<<<<..<<<......<<<<.
>>>>.......>>>...<<<.<<<<<........>>>>>>>>....>>>>
>>>>>...<<<.....>>>......>>>>>>......>.>>..<<<<<<.
...<<<<<....>>>>><<<<<<<<<...<<<<.<<<<......<<...<
<<<<.<<....<.........>....>>.>>>>>..>>.......>>>>.
.>>>>..>>>>>>>.>>..<<<<<<<<<<......>>>>>>>>>>....<
<<......>>>...<<<<.<<<...<<<(((.....<<<<<<.....<<.
.<<<..<<<<................>>>>..>>>.>>...........)
)).....>>>>>>.>>>...>>>>>>><<<<<<.....>>>>>>....>>
>>>>..<<<<<<<.<<......<<<<<.<<....>>.>>>>>...>>.>>
>>>>>........>>>>>><......<<....<<<<<<.......>>>>>
><<<<....<<<<<.<<...<<<<<<...<<.....>>.>>>>>>....(
(<<<<.<<...<<<...<<<....>>>...>>>...>>...<<<<<....
....>>>>>))<<<<<<<...........<....<<<<....<<<<...<
<.................................>>...>>>>.......
..>>>>...>......>>>>>>>>>>>..>>.....<<......>>>>>>
>.<<<.......>>>..>>>>..<<<<....<<<<<<<<.<<........
.<......<<<<....<....>.....>>>>.<<<<<<<.<.........
.>.>>>>>>>............<<<<<<<....<<<.........>>>..
<<<<<<<.....<<<....>>>.......>>>>>>>.<<<<<..<.....
........<........<<<.<.............>.>>>........>.
...........>.<<<<<.....>>>>>....................<<
..<........>.>>..........>>>>>.....>>>>>>>..>..>>.
>>>>>>>>.>>>>>>.....>.....<<<<<........>>>>>..<<<<
<<<<.(((.[[......<<<<.[[<<<<..<<<<<.<<<<<<<<<.<<<<
.<<<<<<<...............<<<<..<<<........<<<.......
...>>>.....>>>............>>>>......>>>>>>>.>>>>..
..<<.<<<<<<.....>>>>>>>>.....>>>>>>>>>..>>>>>..<<<
<.....>>>><<<<<<...........>>>>>>..<<...<<<<<<<...
<<<<<<.......>>>>>>.....<<.[.(((>>....>>>>>>>...<<
<<..<<<......>>>..>>>>.<<<....>>>.>>)))]......<<<<
<<<.((..>>>>..))>>>>>>>.............>>>>..]]>>>>..
.....<<<<...<<.<<<<..<<.......>>...>>>>.>>...>>>.>
.......<<<<<.<<<<<<..<<<<<<<..........>>>>>..>>.<<
<<<.....>>>>>.....>>>>>..>...>>>.>>....<<<<<<<....
>>>.>>>>....]]..)))>>>>>>>>....<<<<<<<.....<<...<.
.........................>......<....<.....<.<.<..
<.<......>>....>.>.>.....>..>........<<....<<<<<..
.........>>>>>....>>..>>........>>>>>>>..<<....>>.
....<..<.<...........>.>.......<.<<..<<.<.......<.
...>........>>>...>>.>.........>.....>.>>.
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7asn Staphylococcus aureus 50S after 30 minutes incubation a 37C
Resolution2.73 Å
Binding residue
(original residue number in PDB)		V6 A7 R8 R11 R15 K16 R18 R25 K41 A42 S53 A56 N57 H60 N61 N77 E78 P80 R86 P87 R88 A89 Q90 G91 R92 A95 I96 N97 K98 R99
Binding residue
(residue number reindexed from 1)		V6 A7 R8 R11 R15 K16 R18 R25 K41 A42 S53 A56 N57 H60 N61 N77 E78 P80 R86 P87 R88 A89 Q90 G91 R92 A95 I96 N97 K98 R99
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0015934 large ribosomal subunit
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:7asn, PDBe:7asn, PDBj:7asn
PDBsum7asn
PubMed
UniProtQ2FW11|RL22_STAA8 Large ribosomal subunit protein uL22 (Gene Name=rplV)

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