Structure of PDB 6tmf Chain Q Binding Site BS01

Receptor Information
>6tmf Chain Q (length=56) Species: 1293037 (Thermococcus celer Vu 13 = JCM 8558) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MAKADYNKRKPRKFGKGARRCVRCGQYGPVIRVHGLMLCRHCFREIAPKL
GFKKYE
Ligand information
>6tmf Chain A (length=1485) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
auuccgguugauccugccggaggccacugcuauggggguccgacuaagcc
augcgagucauggggcgccuugcgcgcaccggcggacggcucaguaacac
gucgguaaccuacccucgggagggggauaaccccgggaaacuggggcuaa
ucccccauaggccugagguacuggaagguccucaggccgaaaggggcucu
gcccgcccgaggaugggccggcggccgauuagguaguuggugggguaacg
gcccaccaagccgaagaucgguacgggccaugagagugggagcccggaga
uggacacugagacacggguccaggcccuacggggcgcagcaggcgcgaaa
ccuccgcaaugcgggcaaccgcgacggggggacccccagugccguggcaa
cgccacggcuuuuccggaguguaaaaagcuccgggaauaagggcugggca
aggccgguggcagccgccgcgguaauaccggcggcccgagugguggccgc
uauuauugggccuaaagcguccguagccgggcccguaagucccuggcgaa
aucccacggcucaaccguggggcuugcuggggauacugcgggccuuggga
ccgggagaggccggggguaccccugggguaggggugaaauccuauaaucc
cagggggaccgccaguggcgaaggcgcccggcuggaacggguccgacggu
gagggacgaaggccaggggagcgaaccggauuagauacccggguaguccu
ggcuguaaaggaugcgggcuaggugucgggcgagcuucgagcucgcccgg
ugccgaagggaagccguuaagcccgccgccuggggaguacggccgcaagg
cugaaacuuaaaggaauuggcgggggagcacuacaagggguggagcgugc
gguuuaauuggauucaacgccgggaaccucaccgggggcgacggcaggau
gaaggccaggcugaaggucuugccggacacgccgagaggaggugcauggc
cgccgucagcucguaccgugaggcguccacuuaagugugguaacgagcga
gacccgcgcccccaguugccaguccuucccgcuggggaggaggcacucug
gggggaccgccggcgauaagccggaggaaggagcgggcgacgguagguca
guaugccccgaaacccccgggcuacacgcgcgcuacaaugggcgggacaa
ugggauccgaccccgaaaggggaagggaauccccuaaacccgcccccagu
ucggaucgcgggcugcaacucgcccgcgugaagcuggaaucccuaguacc
cgcgugucaucaucgcgcggcgaauacgucccugcuccuugcacacaccg
cccgucacuccacccgagcgggguccggaugaggccugaucucccuucgg
ggaggucgggucgagucugggcuccgugaggggggagaagucguaacaag
guagccguaggggaaccuacggcucgaucaccucc
..<<<<<<.[.((((>>>>>><<<<<<<<<..<<<<<<.<<......<<<
.<<<..<<<..<<.<<<<.....>>>>.>>>>>......<<........<
<<<<<<..<<...<<<<<<<.<<<<<....<<<<<<....>>>>>>....
.>>>>>...<<<<<<<<<.<<......>>>>>>>>>>>.....<<<<...
>>>>.>>>>>>>..>>>>>>>>>.<<<....<<<..<<<<<<<<......
.>>>>>>>>>>>......>>>..<<<<<<<<....>>>>...>>>>.>>.
<<<<<............>>>>>.<<<<....>>>>...>>>>>>......
...<<<....<<<<....>>>>..>>>..>>.>>>>>>..<<<<<<<<..
.>>>>>>>>...<<<<<<<<.......>>>>>>>>.....<<<<<((...
...<<<<.....<<..))>>.......>>>>.>>>>>..>>>>>>>>>..
........<<<((.....<<<<...<<<.<<<<<<<.<<<<<<<<<<...
.<<<<<<<<.....>>>>>>>>...>>>>>>>>..>>>>>>>>>...<<<
<<<.....<<<<<<<<<..<<<<<<<<<..<<<......>>>.....>>>
>>>>>>..>>.......<<....>>.>>>>>>>....>>>.>>>...>>>
...>>>>...<<<<<<<...<<...<<<<.<.....>.>>>>...>>>>>
>>>>.........<<<<<<..<<<<<<<<<<<<<<.....>>>>>>>>>>
>>>>...<<..))>>.....>>>>>>.>>>.<<<......<<<<....>>
>>....>>>..)))).]<<<<<.<<<<<<<..<<.<<<<<<..<<<<<<<
<<<......<<........>>..........<<<<<<<...<<<<.....
....<...<<<.....>>>....>......>>>>...<<.<<<..<<<<<
<<<<....<<<<<<.<<....>>...<<<<......>>>>..>>>>>>..
..<<<<<.<<<<<<<..<<...<<<<<<<<...>>>>>>>>.>>...>>>
>>>>.....<<<<<.....>>>>>........>>>>>....>>>.>>>..
.>>>>>>>>....>>>>>>>...>>.>>>>>>>>.....<<<<<<<....
.<<<..<<..<<<<....>>>>..>>....>>>.....>>>>>>>.....
......<<<<<<<........>>>>>>>..........>>>>>>.....<
<<<<<<.......>>>>>>>.......>>...>>>>>>>>>>.>>....<
..<<.<.<<<<.<<<..<<<<<<<<<<<<<..<<<<<<<<<<<<<....>
>>>>>>>>>>>>..>>>>>>>>>>>>>..>>>.>>>>..>.>>...>...
..<<<<<<<<<....>>>>>>>>>...........
Receptor-Ligand Complex Structure
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PDB6tmf Molecular analysis of the ribosome recycling factor ABCE1 bound to the 30S post-splitting complex.
Resolution2.8 Å
Binding residue
(original residue number in PDB)		M1 A2 K3 A4 D5 Y6 N7 K8 R9 K10 R12 F14 K16 G17 R19 C24 Q26 P29 I31 R32 H34 R40 H41 R44 E45 K54 Y55 E56
Binding residue
(residue number reindexed from 1)		M1 A2 K3 A4 D5 Y6 N7 K8 R9 K10 R12 F14 K16 G17 R19 C24 Q26 P29 I31 R32 H34 R40 H41 R44 E45 K54 Y55 E56
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0008270 zinc ion binding
GO:0019843 rRNA binding
GO:0046872 metal ion binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6tmf, PDBe:6tmf, PDBj:6tmf
PDBsum6tmf
PubMed32064661
UniProtA0A218NZW1

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