Structure of PDB 6awc Chain Q Binding Site BS01

Receptor Information
>6awc Chain Q (length=100) Species: 562 (Escherichia coli) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AKQSMKAREVKRVALADKYFAKRAELKAIISDVNASDEDRWNAVLKLQTL
PRDSSPSRQRNRCRQTGRPHGFLRKFGLSRIKVREAAMRGEIPGLKKASW
Ligand information
>6awc Chain A (length=1443) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
aauugaagaguuugaucauggcucagauugaacgcuggcggcaggccuaa
cacaugcaagucgaacgguaacaggaagaagcuugcuucuuugcugacga
guggcggacgggugaguaaugucugggaaacugccugauggagggggaua
acuacuggaaacgguagcuaauaccgcauaacgucgcaagaccaaagagg
gggaccuucgggccucuugccaucggaugugcccagaugggauuagcuag
uaggugggguaacggcucaccuaggcgacgaucccuagcuggucugagag
gaugaccagccacacuggaacugagacacgguccagacuccuacgggagg
cagcaguggggaauauugcacaaugggcgcaagccugaugcagccaugcc
gcguguaugaagaaggccuucggguuguaaaguacuuucagcggggagga
agggaguaaaguuaauaccuuugcucauugacguuacccgcagaagaagc
accggcuaacuccgugccagcagccgcgguaauacggagggugcaagcgu
uaaucggaauuacugggcguaaagcgcacgcaggcgguuuguuaagucag
augugaaauccccgggcucaaccugggaacugcaucugauacuggcaagc
uugagucucguagagggggguagaauuccagguguagcggugaaaugcgu
agagaucuggaggaauaccgguggcgaaggcggcccccuggacgaagacu
gacgcucaggugcgaaagcguggggagcaaacaggauuagauacccuggu
aguccacgccguaaacgaugucgacuuggagguugugcccuugaggcgug
gcuuccggagcuaacgcguuaagucgaccgccuggggaguacggccgcaa
gguuaaaacucaaaugaauugacgggggcccgcacaagcgguggagcaug
ugguuuaauucgaugcaacgcgaagaaccuuaccuggucuugacauccac
ggaaguuuucagagaugagaaugugccuucgggaaccgugagacaggugc
ugcauggcugucgucagcucguguugugaaauguuggguuaagucccgca
acgagcgcaacccuuauccuuuguugccagcgguccggccgggaacucaa
aggagacugccagugauaaacuggaggaagguggggaugacgucaaguca
ucauggcccuuacgaccagggcuacacacgugcuacaauggcgcauacaa
agagaagcgaccucgcgagagcaagcggaccucauaaagugcgucguagu
ccggauuggagucugcaacucgacuccaugaagucggaaucgcuaguaau
cguggaucagaaugccacggugaauacguucccgggccuuguacacaccg
uaacaagguaaccguaggggaaccugcgguuggaucaccuccu
.......<<<<<.[.((((>>>>>.<<<<.<<<<<...<<<<<<......
<<<.<<<...<<..<<.<...<<.<<<<<.......>.>>>>..>>.>..
>>>>.......<<.......<<<<<<<..<<...<<<<<<<...<<....
.<<<<<......>>>>>......>>.......<<......>>....<<<<
<<..<<....>>>>>>>>.>>>>>>>..>>.>>>>>>><<<..<.<<<..
.<<<<<<.........>>>>>>.>>>....>.>>>..<<<<<<<<....>
>>...>>>>>.>>.<<<<<............>>>>>.<<<.<..>.>>>.
..>>>>>>.........<<...<<<<<<....>>>>.>>>>...>.>>>>
>...<<<<.......<<<....>>>......>>>>..<<.<<<<<.....
...<<<<<<<<.......>>>>>>>>..........>>>>>....>>.<<
<<<(((...<<<<<........))).........>>>>>>>>>>..>>>>
>>>>>..........<<<((.....<<<<...<<<.<<<<<<<.<<<<<<
<<<<......<<<<<<.....>>>>>>....>>>>>>>>..>>>>>>>>>
...<<<<<<<<...<<<<<<<....<<<<<<<<.<.<<<......>>>..
...>>>>>>>>.>..........<<....>>.>>>>>>>..>>>.>>>>>
...>>>...>>>>....<<<<<<...<<...<<<<.<.....>.>>>>..
.>>>>>>>>..........<<<<<<..<<<<<<.<<<<<.....>>>>>.
>>>>>>...<<..))>>.....>>>>>>.>>>.<<<.......<<<....
>>>.....>>>..)))).].<<<<.<<<<<<<.<<..<<<<...<<<<<<
<<<<......<<........>>..........<<<<<<<......<<<<<
<<..<<<<<<......>>>>>>...<<....>>..>>>>>.>>.<<<.<<
<..<<<<<<.......<<<<<<<<......>>..<<<<......>>>>..
>>>>>>.....<<<<.<<<<<<<...<....<<.....>>..>....>>>
>>>>.....<<<<<.....>>>>>........>>>>.........>>>..
.>>>>>>>>>...>>>>>>>...>>.>>>>>>>>.....<<<<<<<....
.<<<..<....<<......>>....>....>>>.....>>>>>>>.....
.<....<<<<<<<........>>>>>>>....>......>>>>.....<<
<<<<<.........>>>>>>>......>>...>>>>>>>>>>.>......
.........<<<<<<<<<....>>>>>>>>>............
Receptor-Ligand Complex Structure
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PDB6awc Structure of RNA polymerase bound to ribosomal 30S subunit.
Resolution7.9 Å
Binding residue
(original residue number in PDB)		A1 K2 Q3 S4 M5 R8 K27 L47 Q48 R52 S54 S57 R58 R60 N61 R62 R68 H70 F72 R74 I81 K97 S99
Binding residue
(residue number reindexed from 1)		A1 K2 Q3 S4 M5 R8 K27 L47 Q48 R52 S54 S57 R58 R60 N61 R62 R68 H70 F72 R74 I81 K97 S99
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0000049 tRNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0000028 ribosomal small subunit assembly
GO:0002181 cytoplasmic translation
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6awc, PDBe:6awc, PDBj:6awc
PDBsum6awc
PubMed29027901
UniProtP0AG59|RS14_ECOLI Small ribosomal subunit protein uS14 (Gene Name=rpsN)

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