Structure of PDB 4uy8 Chain Q Binding Site BS01 |
|
>4uy8 Chain A (length=2854)
[Search RNA sequence]
[Download ligand structure]
[Download structure with residue number starting from 1]
[View ligand structure]
|
gguuaagcgacuaagcguacacgguggaugcccuggcagucagaggcgau gaaggacgugcuaaucugcgauaagcgucgguaaggugauaugaaccguu auaaccggcgauuuccgaauggggaaacccaguguguuucgacacacuau cauuaacugaauccauagguuaaugaggcgaaccgggggaacugaaacau cuaaguaccccgaggaaaagaaaucaaccgagauucccccaguagcggcg agcgaacggggagcagcccagagccugaaucaguguguguguuaguggaa gcgucuggaaaggcgcgcgauacagggugacagccccguacacaaaaaug cacaugcugugagcucgaugaguagggcgggacacgugguauccugucug aauauggggggaccauccuccaaggcuaaauacuccugacugaccgauag ugaaccaguaccgugagggaaaggcgaaaagaaccccggcgaggggagug aaaaagaaccugaaaccguguacguacaagcagugggagcacgcuuaggc gugugacugcguaccuuuuguauaaugggucagcgacuuauauucuguag caagguuaaccgaauaggggagccgaagggaaaccgagucuuaacugggc guuaaguugcaggguauagacccgaaacccggugaucuagccaugggcag guugaagguuggguaacacuaacuggaggaccgaaccgacuaauguugaa aaauuagcggaugacuuguggcugggggugaaaggccaaucaaaccggga gauagcugguucuccccgaaagcuauuuagguagcgccucgugaauucau cuccggggguagagcacuguuucggcaagggggucacuuaccaacccgau gcaaacugcgaauaccggagaauguuaucacgggagacacacggcgggug cuaacguccgucgugaagagggaaacaacccagaccgccagcuaaggucc caaagucaugguuaagugggaaacgaugugggaaggcccagacagccagg auguuggcuuagaagcagccaucauuuaaagaaagcguaauagcucacug gucgagucggccugcgcggaagauguaacggggcuaaaccaugcaccgaa gcugcggcagcgacgcuuaugcguuguuggguaggggagcguucuguaag ccugcgaaggugugcugugaggcaugcuggagguaucagaagugcgaaug cugacauaaguaacgauaaagcgggugaaaagcccgcucgccggaagacc aaggguuccuguccaacguuaaucggggcagggugagucgaccccuaagg cgaggccgaaaggcguagucgaugggaaacagguuaauauuccuguacuu gguguuacugcgaaggggggacggagaaggcuauguuggccgggcgacgg uugucccgguuuaagcguguaggcugguuuuccaggcaaauccggaaaau caaggcugaggcgugaugacgaggcacuacggugcugaagcaacaaaugc ccugcuuccaggaaaagccucuaagcaucagguaacaucaaaucguaccc caaaccgacacagguggucagguagagaauaccaaggcgcuugagagaac ucgggugaaggaacuaggcaaaauggugccguaacuucgggagaaggcac gcugauauguaggugaggucccucgcggauggagcugaaaucagucgaag auaccagcuggcugcaacuguuuauuaaaaacacagcacugugcaaacac gaaaguggacguauacggugugacgccugcccggugccggaagguuaauu gaugggguuagcgcaagcgaagcucuugaucgaagccccgguaaacggcg gccguaacuauaacgguccuaagguagcgaaauuccuugucggguaaguu ccgaccugcacgaauggcguaaugauggccaggcugucuccacccgagac ucagugaaauugaacucgcugugaagaugcaguguacccgcggcaagacg gaaagaccccgugaaccuuuacuauagcuugacacugaacauugagccuu gauggaaguguggacgccagucugcauggcuuuaauguuugauguucuaa cguugacccguaauccggguugcggacagugucugguggguaguuugacu ggggcggucuccuccuaaagaguaacggaggagcacgaagguuggcuaau ccuggucggacaucaggagguuagugcaauggcauaagccagcuugacug cgagcgugacggcgcgagcaggugcgaaagcaggucauagugauccggug guucugaauggaagggccaucgcucaacggauaaaagguacuccggggau aacaggcugauaccgcccaagaguucauaucgacggcgguguuuggcacc ucgaugucggcucaucacauccuggggcugaaguaggucccaaggguaug gcuguucgccauuuaaagugguacgcgagcuggguuuagaacgucgugag acaguucggucccuaucugccgugggcgcuggagaacugaggggggcugc uccuaguacgagaggaccggaguggacgcaucacugguguucggguuguc augccaauggcacugcccgguagcuaaaugcggaagagauaagugcugaa agcaucuaagcacgaaacuugccccgagaugaguucucccugacccuuua aggguccugaaggaacguugaagacgacgacguugauaggccgggugugu aagcgcagcgaugcguugagcuaaccgguacuaaugaaccgugaggcuua accu |
<<<<<<<<......<<<<<<<<<<<.....[[..[[<<<<<<<[[<<... ...<<<<<<.[..(((.>>>.....<<<<<<<..<<<)))..].>>>... ...>>>>>>>...>>>....<<<....>>><<<<<<<....>>>>>>>.< <<<<<<<<.........>>>>>>>>>.>>...<<<<<<.....<<....> >......>>>>>.>.........<<....>>..<<<<<<.....<<.... .>>....>>>>>>..(((..<<<<......<<<<<<<<<<<<<.<<<... <<<<<......>>>>>((......<<<.....))>>>...>>>...>>>> >>>>>>>>>...>>>>........<<<<<<<<.........>>>>>>>>. .....<<<<<..<<<<>>>>>..)))......]].>>>>>>>.]]..... ..........<<....>>....]].........<<<<.....>>>>.... ..............>>>>>>>>>>>.......<<<<..<<<<<......> >>>>..>>>>...<.<........>.>.<<<<<<....<<<<<<<<<<<< <..<<<...<<.....>>...>>>...<<....>>..<<<<.....>>>> .....>>>>>>>>>>>>>..<<.<...<<<<<<.....<<<<<<<<<..< <<....<<<<<<......>>>>>>.....>>>...<<<.<<<<<...... ..>>>>>>>>....>>>>>>>>>...<<<.....>>>......>>>>>>. .....>.>>..<<<<<<....<<<<<....>>>>>.<<<<<<<<...<<< <<<<<<.....<<<...<<<.<<<<...<<.<.....>..>>...>>>>. >>>..>>.>.....>>>>>>.>>>...>>>>>>>.>...<<<<<<<<<<. .....>>>>>>>>>>....<<<......>>>...<<<<.<<<...<<<(( (.....<<<<<<...........<<..<<<<<..<<........<<<<<. <<...<<<<.......>>>>...>>........<<<......>>>..>>> >>....>>..>>>>>.>>...........))).....>>>>>>.>>>... >>>>>>><<<<<<<<<....>>>>>>>>>....>>>>>>..<<<<<...< <<......<<<<<<<<....>>>>>>>>...>>>..>>>>>........> >>>>><......<<.....<<<<<<.......>>>>>><<<<....<<<< <.<<...<<<<<<...<<.....>>.>>>>>>....((<<<.<<<...<< <...<<<....>>>...>>>...>>>..<<<<<........>>>>>))<< <<<<<<<<<<<...<<<<....<<<<..<<<..<<<<<<<<<<<....(( (...>>>>>><<..<<<<...<<<<<<<<<<<<.<<.....>>>>>>>>> >..>>>>...>>>>...>><..<<<<<....>>>>>...>>>>>>...>> >...>>>>.........>>>>...>>....>>>>>>>>>>>.>>>..>>. ....<<......>>>>>>>.<<<<.....>>>>..>>>>..<<<<....< <<<<<<<.<<...............<<<<<...............>>>>> <<<<<<.....<<<...<<<<.....>>>>...>>>...>>>>>>..... .......<<<<<<<<<..<<<.........>>>..<<<<<<<.....<<< ....>>>.......>>>>>>>.<<<<<.<<<..<<<<<<<..<<<....< ...<<<<<..<<....>>...>>>>>.>......>>>>>>>>..>>>>>< <<<<<.......>>>>>>........<...........<<<<<<.....> >>>>>.....>....>>>>>..>>.>>>>>>>.....>>.>>>>>>>>.> >>>>>.....>.....<<<<<........>>>>>..<<<<<<<<.(((.[ [......<<<<.[[<<<<..<<<<<.<<<.<<<<<.<<<<<<<<<<<... ....................................>>>>>>>>>>>... <<<.<<<<<<.....>>>>>>>>>....>>>>>.>>>..>>>>>..<<<< .....>>>><<<<<<...........>>>>>>..<<...<<<<<<<...< <<<<<.......>>>>>>.....<<...(((>>....>>>>>>>...<<< <..<<<<....>>>>..>>>>.<<<....>>>.>>))).......<<<<< <<.((..>>>>..))>>>>>>>.............>>>>..]]>>>>... ....<<<<...<<<<<<...<<.......>>...>>>>>>....>>>.>. ......<<<<<.<<<<<<..<<<<<<<<<......>>>>>>>..>>.<<< <<.....>>>>>.....>>>>>..>...>>>.>>....<<<<<<<....> >>.>>>>....]]..)))>>>>>>>>....<<<<<<<...<<<<..<<<< <<<...............>>>>>>>.<<<<<...<<<<...<<<<<<<<< <<))).>>>>>>..>>>>>...>>>>.>>>>>...<<<....<<<<<... ........>>>>>....>>>.>>>>.......>>>>>>>..<<<<<.... .>>>>>.....<<..<<<<<.......>>>>>....<<<<<<<<..<<.. ..<<<<<....>>>>>...>>...>>>>>.>>>.....>>.....>>>>> >>>. |
|
Global view | Local view | Structure summary |
[Spin on]
[Spin off]
[Reset]
[High quality]
[Low quality]
[White background]
[Black background]
|
[Spin on]
[Spin off]
[Reset]
[High quality]
[Low quality]
[White background]
[Black background]
|
PDB | 4uy8 Molecular Basis for the Ribosome Functioning as an L-Tryptophan Sensor. |
Resolution | 3.8 Å |
Binding residue (original residue number in PDB) | A1 R2 V3 K4 R5 G6 V7 I8 R10 R12 H13 K14 K15 K18 K21 G22 Y23 Y24 G25 A26 R27 R29 V30 Y31 R32 V33 Q36 K40 A41 Y44 Y46 R47 D48 R49 R50 R52 K53 R54 Q55 F56 R57 Q58 W60 I61 N65 R69 S74 Y75 S76 N80 R91 K92 |
Binding residue (residue number reindexed from 1) | A1 R2 V3 K4 R5 G6 V7 I8 R10 R12 H13 K14 K15 K18 K21 G22 Y23 Y24 G25 A26 R27 R29 V30 Y31 R32 V33 Q36 K40 A41 Y44 Y46 R47 D48 R49 R50 R52 K53 R54 Q55 F56 R57 Q58 W60 I61 N65 R69 S74 Y75 S76 N80 R91 K92 |
|
|
Enzyme Commision number |
? |
|
|
|