Structure of PDB 3jd5 Chain Q Binding Site BS01

Receptor Information
>3jd5 Chain Q (length=109) Species: 9913 (Bos taurus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MSVVRSSVHAKWIVGKVIGTAMQKTAKVRVTRLVLDPYLLKYFNKRKTYF
AHDALQQCTVGDIVLLKALPVPRTKHVKHELAEIVFKVGQVVDPVTGKRC
AGTTYLESP
Ligand information
>3jd5 Chain A (length=952) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
agguuuggucccagccuuccuguuaacucuuaauaaacuuacacaugcaa
gcaucuacaccccagugagaaugcccucuagguuauuaaaacuaagagga
gcuggcaucaagcacacacccuguagcucacgacgccuugcuuaaccaca
ccccacgggaaacagcagugacaaaaauuaagccauaaacgaaaguuuga
cuaaguuauauuaauuaggguugguaaaucucgugccagccaccgcgguc
auacgauuaacccaagcuaacaggaguacggcguaaaacguguuaaagca
ccauaccaaauaggguuaaauucuaacuaagcuguaaaaagccaugauua
aaauaaaaauaaaugacgaaagugacccuacaauagccgacgcacuauag
cuaagacccaaacugggauuagauaccccacuaugcuuagcccuaaacac
agauaauuacauaaacaaaauuauucgccagaguacuacuagcaacagcu
uaaaacucaaaggacuuggcggugcuuuauauccuucuagaggagccugu
ucuauaaucgauaaaccccgauaaaccucaccaauucuugcuaauacagu
cuauauaccgccaucuucagcaaacccuaaaaaggaaaaaaaguaagcgu
aauuaugauacauaaaaacguuaggucaagguguaaccuaugaaauggga
agaaaugggcuacauucucuacaccaagagaaucaagcacgaaaguuauu
augaaaccaauaaccaaaggaggauuuagcaguaaacuaagaauagagug
cuuaguugaauuaggccaugaagcacgcacacaccgcccgucacccuccu
caaauagauucagugcaucuaacccuauuuaaacgcacuagcuacaugag
aggagacaagucguaacaagguaagcauacuggaaagugugcuuggauaa
au
<<<.<..{..[[.>.>>><<<<<<<.<..<<<<<<<.....<<<.<<<..
..............<<......<<<<<<..<<<.......>>>..>>>>.
>>.<<<....<<<..<<.....>>.>>>......>>>..........>>.
..............>>>>>>..........<<.....<<......>>...
>>....>.>>>>>>....<<<<<<<.....(((.....((.>>>))....
...)))..>>>.>..>.>>>>>>>.....<<<((.....<<<.<...<..
..........<<<<<<........<<.<..<<<......>>>...>.>>.
................<....>..>>>>>>......>....>>>>..<<<
<<<<<....<...<<<<.........>>>>...>.>>>>>>..>>.....
.<<<<<<.......))...>>>>>>.>>>.<<<.......<<<....>>>
.....>>>...]]..}<<<<<.<<<<<<<....<..<<<<<...<<<<<<
<<<.....<<........>>..........<<<.<<<...........<<
.<<<..<<<<<<.......<<..<<<<<....>>>.......>>..>>..
...<<.......>.>........>>>...>>>>>>>>....>>>.>>>..
>>.>>>>>>>......<<<<......>>>>..............<<<<<<
........>>>>>>..........>>>>>.....<<<<<<<.........
>>>>>>>......>....>>>>>>>>>>.>>....<..<<.<...<<<<<
<....<.....<<<<<....<........>....>>>>>...>......>
>>>>>....>.>>...>......<<<<<<<<....>>>>>>>>.......
..
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB3jd5 Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome.
Resolution7.0 Å
Binding residue
(original residue number in PDB)		R5 S6 S7 V8 H9 A21 M22 Q23 K24 T25 K27 R32 N44 R46 K47 T48 Y49 F50 H52 R73 T74 H76
Binding residue
(residue number reindexed from 1)		R5 S6 S7 V8 H9 A21 M22 Q23 K24 T25 K27 R32 N44 R46 K47 T48 Y49 F50 H52 R73 T74 H76
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005739 mitochondrion
GO:0005743 mitochondrial inner membrane
GO:0005763 mitochondrial small ribosomal subunit
GO:0005840 ribosome
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
View graph for
Cellular Component
External links
PDB RCSB:3jd5, PDBe:3jd5, PDBj:3jd5
PDBsum3jd5
PubMed24799711
UniProtP82916|RT17_BOVIN Small ribosomal subunit protein uS17m (Gene Name=MRPS17)

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