Structure of PDB 3gzt Chain Q Binding Site BS01

Receptor Information
>3gzt Chain Q (length=255) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PITGSMDTAYANSTQEETFLTSTLCLYYPTEAATEINDNSWKDTLSQLFL
TKGWPTGSVYFKEYTDIASFSVDPQLYCDYNVVLMKYDATLQLDMSELAD
LILNEWLCNPMDITLYYYQQTDEANKWISMGSSCTIKVCPLNTQTLGIGC
LTTDTATFEEVATAEKLVITDVVDGVNHKLDVTTATCTIRNCKKLGPREN
VAVIQVGGSDVLDITADPTTAPQTERMMRINWKKWWQVFYTVVDYVNQII
QAMSK
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain3gzt Chain Q Residue 342 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB3gzt Molecular interactions in rotavirus assembly and uncoating seen by high-resolution cryo-EM
Resolution3.8 Å
Binding residue
(original residue number in PDB)		Q177 D228 D231
Binding residue
(residue number reindexed from 1)		Q120 D171 D174
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0046872 metal ion binding
Biological Process
GO:0046813 receptor-mediated virion attachment to host cell
Cellular Component
GO:0019028 viral capsid
GO:0039621 T=13 icosahedral viral capsid
GO:0039624 viral outer capsid
GO:0044165 host cell endoplasmic reticulum
GO:0044166 host cell endoplasmic reticulum lumen

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:3gzt, PDBe:3gzt, PDBj:3gzt
PDBsum3gzt
PubMed19487668
UniProtP12476|VP7_ROTRH Outer capsid glycoprotein VP7

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