Structure of PDB 1fka Chain Q Binding Site BS01

Receptor Information
>1fka Chain Q (length=84) Species: 274 (Thermus thermophilus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
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Ligand information
>1fka Chain A (length=1479) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uggagaguuugauccuggcucagggugaacgcuggcggcgugccuaagac
augcaagucgugcgggccgcgggguacuccguggucagcggcggacgggu
gaguaacgcgugggugaccuacccggaagagggggacaacccggggaaac
ucgggcuaaucccccauguggacccgccccuugggguguguccaaagggc
uuugcccgcuuccggaugggcccgcgucccaucagcuaguugguggggua
auggcccaccaaggcgacgacggguagccggucugagaggauggccggcc
acaggggcacugagacacgggccccacuccuacgggaggcagcaguuagg
aaucuuccgcaaugggcgcaagccugacggagcgacgccgcuuggaggaa
gaagcccuucgggguguaaacuccugaacccgggacgaaacccccgacga
ggggacugacgguaccgggguaauagcgccggccaacuccgugccagcag
ccgcgguaauacggagggcgcgagcguuacccgcguaaagggcguguagg
cggccuggggcgucccaugugaaagaccacggcucaaccgugggggagcg
ugggauacgcucaggcuagacggugggagagggugguggaauucccggag
uagcggugaaaugcgcagauaccgggaggaacgccgauggcgaaggcagc
caccugguccacccgugacgcugaggcgcgaaagcguggggagcaaaccg
gauuaacccggguaguccacgcccuaaacgaugcgcgcuaggucucuggg
ucuccugggggccgaagcuaacgcguuaagcgcgccgccuggggaguacg
gccgcaaggcugaaacucaaaggaauugacgggggcccgcacaagcggug
gagcaugugguuuaauucgcgaagaaccuuaccaggccuugacaugcuag
ggaacccgggugaaagccuggggugcccgcgagggagcccuagcacaggu
gcugggccgucgucagcucgugccgugagguguuggguuaagucccgcaa
cgagcgcaacccccgccguuaguugccagcgguucggccgggcacucuaa
cgggacugcccgcgaaagcgggaggaaggaggggacgacgucuggucagc
auggcccuuacggccugggcgacacacgugcuacaaugcccuacaaagcg
augccacccggcaacggggagcuaaucgcaaaaaggugggcccaguucgg
auuggggucugcaacccgaccccaugaagccggaaucgcuaguaaucgcg
gaucagccaugccgcggugaauacguucccgggccuuguacacaccgccc
gucacgccaugggagcgggcucuacccgaagucgccgggagccuacgggc
aggcgccgaggguagggcccgugacuggggcgaagucguaacaagguagc
uguaccggaaggugcggcuggaucaccuc
....<<<<<...((((>>>>>.<<<..<<<<<..<<<<<<...<.....<
...<..<<..<<<.<<<<<<<<<<..>>>>>>>>>>.>>>>>......<<
.......<<<<<<<...<<...<<<<<<<.<<<<<....<<<<<......
>>>>>.....>>>>>.....<<<.<<<<<....>>>>>.>>>....<<<<
...>>>>.>>>>>>>..>>.>>>>>>>.<<..<.<<<..<<<<<<<<.<.
...>>>>>>>>>>>>...>...>>..<<<<<<<......>>>...>>>>.
>>.<<<<<.<<.......>>>>>>>.<<<<....>>>>...>..>...>.
.....<<<....<<.<......>.>>..>>>....>>>>>>..<<<<...
...<<<<....>>>>.....>>>>....<<<<.<........<<<.....
>.>>..........>>>>>......<<<<<(((...<<<<<........)
)).........>>>>>>>>>>..>>>>>.>>><<.......<<<<...<<
<.<<<<<<.<<<<<<<<<<<......<<<<<<.....>>>>>>....>>>
>>>>>..>>>>>>>>>...<<<<<<<<...<<<<<<<....<<<<<<<..
<.<<<......>>>......>>>>>>>>...........<<....>>.>>
>>>>>..>>>>.>>>>...>>>...>>>>....<<<<.<<..<<..<<<<
<......>>>>.>.>>>>>>>>..........<<<<<<<.<<<<<<<<<<
...>>>>>>>>>>...............>>>>>>>.>>..<........<
<<<....>>>>.....>...))))....<<<.<<<<<......<<<<<..
.<<<<<<<<<<....................<<<<<<.......<.<<<<
<<..<<<<<<<....>>>>>>>...<........>..>>>>>>.>..<<.
.<...<.<..<....<<<<<<<<<....>>>..<<<<......>>>>..>
>>>>>.....<<<<.<<<<<<<...<<..<<<.....>>>>>....>>>>
>>>.....<<<<......>>>>........>>>>.....>....>>....
...>.>>.....>>>>>>...>>.>>>>>>>>.....<<<<.<<......
..<...<<<......>.>>..>.............>>>>>>.........
..<<<<<<<........>>>>>>>...........>>>>>....<<<<<<
<..........>>>>>>>.............>>>>>>>>..........<
<.<.<<<..<.<<.<<<<<<<<<<<<....<.<<<......<<<..>>>.
..>>>.>...>>>>>>>>>>>>..>>>..>>>..>.>>.........<<<
<<<<<<....>>>>>>>>>..........
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB1fka Structure of functionally activated small ribosomal subunit at 3.3 angstroms resolution.
Resolution3.3 Å
Binding residue
(original residue number in PDB)
X1 X2 X13 X29 X42 X119 X126 X127 X128
Binding residue
(residue number reindexed from 1)
X1 X2 X13 X29 X42 X75 X82 X83 X84
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