Structure of PDB 9cf3 Chain P Binding Site BS01

Receptor Information
>9cf3 Chain P (length=726) Species: 35722,83333 [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PSKRVITIKTTIKGIWKYDYRQPLYDLVHTTNLLVTHTYAFTKYIFLKEL
ATDENFAFNELITKDFFVEVFLSLVSAKAGNSERLKDTTKRYRSLIGKHK
DAYFEDAKYTPISLAYAQQIALYECAKVQTAYFNNMKAHFGNRLRALINK
LFKKKEKVESLTKEMEANNFSIKEIKQAIRKNVYQPCNQVKLAITKKNMP
ESGLLDDKSVTQLNEFFSMYAVDYTFQKESIFYDVVANPEKHFKAFYKLA
QLSEAYEVKPFACFPLRRTFIPCYMTVDSKILNYHILKNKKVLKMDEKFN
AWGRVVNLERKAFKSQGCKKTLHFQGTLETDGVGVSILKQNTDTNRKYIE
KLEDAELKQTLGKCVLMDPGRRDLLYCMKETSRADKKEIMIFTKNDRSKC
SRHFRRLRKLLQPSQIREAETYLSGFATKSVNMEKFVEYIQARASVKDIL
YEYYGNETAKSITEFYPESQFDFKVDQKCNLYYENLFVAKIRGFYPQPEH
EPNDITLKSHMYHTYLQIMLNQKHISERLNSEKRRKIEDLAKAILEQPHE
SGHKTTISSLLGKLRLLPFRKMKFSTKLFSDNNDRKLVKNIKKKFGADAV
LVLGNWSAPNTKYQDPTRNKGLRRMLKKNGFPLYLIDEFRTSSFCPKCES
DLEKFKVIPNPRPHNQEKQPKVLCHGLLRCKNMSCLEQQTSEGNQRLWNR
DQAAVLNFRKILNCLRETKQRPPLFS
Ligand information
>9cf3 Chain W (length=58) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uccaccaaaguuaucgcuuuggucaauuaaugcagguaagcaacauccag
caaacaga
...<<<<<<<......>>>>>>>.......<<<......>>>........
........
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB9cf3 Structural insights into the diversity and DNA cleavage mechanism of Fanzor.
Resolution3.2 Å
Binding residue
(original residue number in PDB)
V107 I108 T109 I110 K111 T112 Y141 A233 N237 H241 F363 A364 P367 L368 R369 Y376 Q418 E431 R490 S500 R501 I507 N513 K517 R520 H521 R524 L525 K527 L529 R535 T539 N598 Y600 L604 F605 R646 L682 L685 P686 K689 L696 R703 T729 K730 Y731 Q732 D733 K774 H782 G794 L795 R814 L815 W816 N817 Q820 R827
Binding residue
(residue number reindexed from 1)
V5 I6 T7 I8 K9 T10 Y39 A131 N135 H139 F261 A262 P265 L266 R267 Y274 Q316 E329 R372 S382 R383 I389 N395 K399 R402 H403 R406 L407 K409 L411 R417 T421 N480 Y482 L486 F487 R528 L564 L567 P568 K571 L578 R585 T611 K612 Y613 Q614 D615 K656 H664 G676 L677 R696 L697 W698 N699 Q702 R709
External links
PDB RCSB:9cf3, PDBe:9cf3, PDBj:9cf3
PDBsum9cf3
PubMed39208796
UniProtA0A0B7NJM7;
P0AEX9|MALE_ECOLI Maltose/maltodextrin-binding periplasmic protein (Gene Name=malE)

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