Structure of PDB 8kd7 Chain P Binding Site BS01

Receptor Information
>8kd7 Chain P (length=79) Species: 8355 (Xenopus laevis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVT
YTEHAKRKTVTAMDVVYALKRQGRTLYGF
Ligand information
>8kd7 Chain X (length=153) [Search DNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
tctagaacaggatgtatatatctgacacgtgcctggagactagggagtaa
tccccttggcggttaaaacgcgggggacagcgcgtacgtgcgtttaagcg
gtgctagagctgtctacgaccaattgagcggcctcggcaccgggattctc
cag
Receptor-Ligand Complex Structure
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PDB8kd7 Structural basis of nucleosome deacetylation and DNA linker tightening by Rpd3S histone deacetylase complex.
Resolution3.09 Å
Binding residue
(original residue number in PDB)		R35 I46 G48 R78 K79
Binding residue
(residue number reindexed from 1)		R14 I25 G27 R57 K58
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0005515 protein binding
GO:0030527 structural constituent of chromatin
GO:0046982 protein heterodimerization activity
Biological Process
GO:0006334 nucleosome assembly
Cellular Component
GO:0000786 nucleosome
GO:0005634 nucleus
GO:0005694 chromosome

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8kd7, PDBe:8kd7, PDBj:8kd7
PDBsum8kd7
PubMed37666978
UniProtP62799|H4_XENLA Histone H4

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