Structure of PDB 8bf9 Chain P Binding Site BS01 |
|
|
| >8bf9 Chain 5 (length=1766)
[Search RNA sequence]
[Download ligand structure]
[Download structure with residue number starting from 1]
[View ligand structure]
|
agcauauuagucagcggaggagaagugaacagggaagagcccagcgccaa
ucccgccccggcggggcggggacauguggcguacggaaggggcccaaguc
cuucugacgaggcgcccguggcgguggaggcgguagggccccggagucgg
guugcuugggaaugcagcccaaagcgggugguaaacuccaucuaaggcua
auaccggcacgagaccgauagucaacaaguaccguaagggaaaguugaaa
cuuugaagagagaguucaagaggcgugaaaccguucgacccgucuugaaa
cacggaccaaggagucuaacacgugcgcgagucggggcucgcacgaaagc
ccguggcgcaaugagcgcacguguuaggacccgaaagauggugaacuaug
ccugggcagggcgaagccagaggaaacucugguggagguccguagcgguc
cugacgugcaaaucggucguccuggguauaggggcgaaagacuaacgaac
caucuaguagcugguucccuccggggccgcugcggugagccuugaagccu
agggcgcgggcccggguggagccgccgcaggugcagaucuuggugguagu
agcaaauauucaaacgagcuuugaaggccgaguggagaaggguuccaugu
aacagcaguugaacaugggucagucgguccugagagaugggcgagcgccg
uucgaagggacgggcgauggccuccguugcccucggccgaucgaaaggga
gucggguucagauccccgaauccggggcggagauggcgccgcgaggcguc
cagugcgguaacgcgaccgaucccggagaagccggcgggagccccgggga
gaguuucuuuucuuuugaagggcagggcgcccuggaauggguucgccccg
agagaggggcccgugccuuggaaagcgucgcgguccggcggcguccggug
agcucucgcuggcccuugaaaauccgggggagaggguguaaaucucgcgc
cgggccguacccauauccgcagcaggucuccaaggugaacagccucuggc
auguuggaacaauguagguaagggaagucggcaagccggauccguaacuu
cgggauaaggauuggcucuaagggcugagcagccgacuuagaacuggugc
ggaccaggggaauccgacuguuuaauuaaaacaaagcaucgcgaaggccc
gcggcggguguugacgcgaugugauuucugcccagugcucugaaugucaa
agugaagaaauucaaugaagcgcggguaaacggcuaagguagccaaaugc
cucgucaucuaauuagugacgcgcaugaauggaugaacgagauucccacu
gucccuaccuacuauccagcgaaaccacagccaagggaacgggcuuggcg
gaaucagcggggaaagaagacccuguugagcuugacucuagucuggcacg
gugaagagguuuuuucacugacccggugaggcgggggcgcuucuggcgcc
aagcgcccggccgcccggccggcgcgacccgcuccggggacagugccagg
uggggaguuugacuggggcgguacuuggguuuuaagcaggaggugucaga
aaaguuaccacagggauaacuggcuugugauccuucgaugucggcucuuc
acccacuaauagggaacgugagcuggguuuagaccgucgugagacagguu
aguuuuacccuacugaugauguaugugcuuggcugaggagccaauggggc
gaagcuaccaucugug |
......................................[[[...<<<<..
<<<<<<<<<...>>>>>.>>>>.....>>>>...<<.....<<<<....<
<<<.....>>>>..<<.....((.....>>))...>>>>>>.......<<
<<<<<........>>>>>>>.....(((((..<<<<<<)))))..]]]..
...............................<<....>>...........
<<<<....>>>>...........................<<<<.......
.>>>><<<<<<....<<<<<<<<<<<<<..<<<.<<<<<........>>>
>>..>>>.......>>>>>>>>>>>>>..<<.<..<<<<<<<.....<<<
<<<<<...<<<....<<<<<<<....>>>>>>>.....>>>...<<<..<
<.<<........>>>>.>>>.>>>>>>>>...<<.......>>.....>>
>>>>...>..>.>>..<<<....>>>...<<<<<<<<.<<......<<<<
.<<<<....>>>>>>>>...>>>>>>>>>>........>>>>>><<....
.<<.....<<<<<<.....>>>>>>.<<<....<<<<<.<<...<<<<<<
..<<.....>>.>>>>>>....((<<<<<<...<<....<<<....>>>.
........<<.<<<....<.....>....>>>>>......>>....>>>.
.<<<<<........>>>>>))<<<<.<<<<....<<<<<......>>>.>
>...<<<....>>>...<..<<<<<<<...<<<<<<<<<<<<.<<<<<<<
<<<..{{..>>>>>>...<<<<<.<<<<.<<<<.....<<<.....>>>.
....>>>>>>>>..>>>>>.....<<<<<<<......>>>>>>>>>>>..
.>>>>>>>>>>>>.........>>>>>>>..>..........>..>>>.>
>>>.>>>..>>.....<<......>>>>>>>.<<<<.....>>>>..>>>
....<<<<.....<<<<<<<.<<.........<.....<<<<<....<..
..>.....>>>>><<.<<<<<<<<<<....>>>>..>>>>>>.>>.....
.......<<<<<<<<<..<<<.........>>>..<<<<<<<....<<<<
.....>>>>......>>>>>>>...<<..<<<..<<<<<<.<...<<...
..<<<<....>>>>.....>>.>>>>>..>>>>>.......<........
...<<<<<.......>>>>>.....>.....>>....>>.>>>>>>>..>
..>>.>>>>>>>..>>>>>>....>>....<<<<<........>>>>>..
..(((((..[[[.[[......((((.[[((((..<<<<<.<<<<<<<<<.
<<<<<<<....>>>>>>>...<<<<<.....<<<<...............
..<<<.<<<<<<....>>>>>>>>>..>>>>..>>>>>....>>>>>>>>
>..>>>>>...<<<.....>>>....>>>>>>..................
..))))..]])))).......<<.......>.>.......<<<<<.<...
.................>...>>>.>>....<<<<<<<....>>>.>>>>
....]]..]]].))))).......<<.<<<<<<<}}..>>>>>..>>.>>
................ |
|
| Global view | Local view | Structure summary |
[Spin on]
[Spin off]
[Reset]
[High quality]
[Low quality]
[White background]
[Black background]
|
[Spin on]
[Spin off]
[Reset]
[High quality]
[Low quality]
[White background]
[Black background]
|
| PDB | 8bf9 Molecular view of ER membrane remodeling by the Sec61/TRAP translocon. |
| Resolution | 2.69 Å |
Binding residue
(original residue number in PDB) | Y4 K16 R18 S20 R23 H25 F26 K27 Q34 K37 R62 Y63 G65 G66 G68 R69 W78 T79 Q80 R82 W83 P84 K85 K86 N97 S100 N101 L104 Q118 V119 R127 T129 Y130 R131 A132 H133 G134 R135 I136 N137 P138 Y139 M140 S141 |
Binding residue
(residue number reindexed from 1) | Y1 K13 R15 S17 R20 H22 F23 K24 Q31 K34 R59 Y60 G62 G63 G65 R66 W75 T76 Q77 R79 W80 P81 K82 K83 N94 S97 N98 L101 Q115 V116 R124 T126 Y127 R128 A129 H130 G131 R132 I133 N134 P135 Y136 M137 S138 |
|
|
| Enzyme Commision number |
? |
|
|
|
|
|
